PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000562
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 288aa    MW: 31844.6 Da    PI: 10.1025
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000562genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19122155134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  PGSC0003DMP400000562 122 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 155
                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.2E-17116170IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-12119155No hitNo description
PROSITE profilePS5011412.532120152IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-15120155IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.22E-13121153No hitNo description
PfamPF003205.7E-17122155IPR000679Zinc finger, GATA-type
PROSITE patternPS003440122147IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSLVSPYNNN YQFSSSSTNS SCQTFFNIST TTNIQDQSGY DYHSHQFHQP QHQHEVDNFA  60
SRSSGSHDHL EKKNKGLKLT LCKKGEQKMK NLKLEDQKQQ IIETDYSSNS SSNNNIIPIR  120
VCSDCNTTKT PLWRSGPKGP KSLCNACGIR QRKARRAAAA AAAATNNGTN FTSTETTTTM  180
KIKVQQQKHK ITKVNTNHVV PFKKRCKFLS NTTTTPAPVP APAPRVGSSS SSSSYNNNND  240
VQQKKNLCFE DFFVNLSNNL AIHRVFPQDE KEAAILLMAL SSGLVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000562
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-131HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353530.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLM0ZH970.0M0ZH97_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000007610.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-19GATA family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]