PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_36425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 70aa MW: 8132.48 Da PI: 11.769 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.1 | 4.1e-28 | 18 | 67 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rW++eLH+rFv+ave+LGG+ kAtPk+il lm+v+gL+++hvkSHLQ PEQU_36425 18 PRIRWSNELHNRFVRAVESLGGQTKATPKRILLLMGVNGLSISHVKSHLQ 67 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 14 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.962 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.09E-14 | 16 | 68 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-22 | 18 | 69 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-8 | 21 | 69 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MEICDKRRVR QYNRSEAPRI RWSNELHNRF VRAVESLGGQ TKATPKRILL LMGVNGLSIS 60 HVKSHLQVLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-16 | 19 | 67 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 19 | 67 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 19 | 67 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 19 | 67 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020588172.1 | 6e-43 | protein PHOSPHATE STARVATION RESPONSE 3-like | ||||
Swissprot | Q700D9 | 3e-19 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2I0VE68 | 2e-38 | A0A2I0VE68_9ASPA; Myb family transcription factor | ||||
STRING | XP_008811121.1 | 4e-26 | (Phoenix dactylifera) | ||||
STRING | GSMUA_Achr9P30700_001 | 2e-26 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-22 | G2-like family protein |