PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_31999
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 766aa    MW: 84347.6 Da    PI: 5.1462
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_31999genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-2064119156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PEQU_31999  64 KKRYHRHTQHQIQEMENFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 119
                 688999***********************************************999 PP
2START222.21.6e-692574771206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+++ep+W+  +    + +n++e++q+f+++ +      ++ea+r+++vv+m++++lve+l+d + qW +++     +a+tl+v+s
  PEQU_31999 257 ELAVTAMEELIRMAQLGEPLWSPGPdgatSTLNEEEYMQNFPRGIGpnpfgLRSEASRETAVVIMNHVNLVEILMDAN-QWCTMFSgivsRAMTLDVLS 354
                 57899**************************************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m++e+q++splvp R+ +f+Ry++q+++g+w+ivdvS+ds ++ +    v++++++pSg+li++++ng+skv+wveh+++++r++h
  PEQU_31999 355 TGvagnynGALQVMTSEFQVPSPLVPtRECYFIRYCKQHPDGTWAIVDVSLDSLRPSQ----VMKCRRRPSGCLIQEMPNGYSKVIWVEHIEVDDRSVH 449
                 *******************************************************976....8************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +l+++lv+sgla+gak+wv tl+rqce+
  PEQU_31999 450 NLYKPLVNSGLAFGAKRWVCTLDRQCER 477
                 **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-2246119IPR009057Homeodomain-like
SuperFamilySSF466891.0E-1951121IPR009057Homeodomain-like
PROSITE profilePS5007117.03861121IPR001356Homeobox domain
SMARTSM003891.4E-1962125IPR001356Homeobox domain
CDDcd000861.71E-1963122No hitNo description
PfamPF000469.8E-1864119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PROSITE profilePS5084842.907248480IPR002913START domain
SuperFamilySSF559612.61E-35249479No hitNo description
CDDcd088751.57E-127252476No hitNo description
SMARTSM002343.4E-64257477IPR002913START domain
PfamPF018524.5E-57258477IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-4353467IPR023393START-like domain
SuperFamilySSF559611.0E-16496587No hitNo description
SuperFamilySSF559611.0E-16621759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
QTDILETQQL PFQHQLIEVH TPPTTTAESE IMRAGEDDLE SKSGSENIEG ASGDEQDPNQ  60
RPRKKRYHRH TQHQIQEMEN FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKT  120
QHERQENGQL RADNERLRTE NLRYKEALSN ASCPTCGGPA ALGEMSFDEH HLRIENGRLR  180
EEIDRISGIA AKYVGKPMGS LPLLSPSSTS RSPLDLGIGG FSTVQPTGLA GGDIYRSGEF  240
LRSVSGQPEI DKPLVIELAV TAMEELIRMA QLGEPLWSPG PDGATSTLNE EEYMQNFPRG  300
IGPNPFGLRS EASRETAVVI MNHVNLVEIL MDANQWCTMF SGIVSRAMTL DVLSTGVAGN  360
YNGALQVMTS EFQVPSPLVP TRECYFIRYC KQHPDGTWAI VDVSLDSLRP SQVMKCRRRP  420
SGCLIQEMPN GYSKVIWVEH IEVDDRSVHN LYKPLVNSGL AFGAKRWVCT LDRQCERLAS  480
VMANNIPSGD IGVITTSEGR KSMLKLAERM VISFCGGVSA STTHQWTTLS GSGAEDVRVM  540
TRKSLDDPGR PPGIVLNAAT SFWLPVAPKR VFDFLRDESS RSEVWLTQFT FTDYISKLLS  600
LCCFDLEIFL KWDILSNGGV VQEMAHIANG REHGNCVSLL RVNSTNSSQS NMLILQESCT  660
DLTGSYVIYA PVDVVAMNVV LNGGDPDYVA LLPSGFAILP DGYDGVNGVG SGIEEVGSGG  720
SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA AMSGES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591591.10.0homeobox-leucine zipper protein ROC2-like isoform X2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A2I0WMP20.0A0A2I0WMP2_9ASPA; Homeobox-leucine zipper protein ROC2
STRINGXP_008784552.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]