PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_27271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C3H | ||||||||
Protein Properties | Length: 468aa MW: 51755.8 Da PI: 7.9832 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.4e-11 | 127 | 151 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtG Ck+G++Ck++H++ PEQU_27271 127 QPDCQYFLRTGMCKFGATCKYHHPR 151 789********************96 PP | |||||||
2 | zf-CCCH | 39.4 | 1e-12 | 173 | 196 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtGtCk+G CkF H++ PEQU_27271 173 KSCSYYMRTGTCKFGVACKFDHPQ 196 56********************97 PP | |||||||
3 | zf-CCCH | 38.6 | 1.8e-12 | 316 | 341 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG CkyG++Ck++H++ PEQU_27271 316 DQPDCQYYLRTGSCKYGSTCKYHHPK 341 6899********************96 PP | |||||||
4 | zf-CCCH | 33.4 | 7.8e-11 | 361 | 385 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++ +GtC++G+ C+F H+ PEQU_27271 361 GHAVCSFYSMYGTCRFGSACRFDHP 385 7899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd01647 | 1.83E-33 | 1 | 102 | No hit | No description |
SuperFamily | SSF56672 | 2.67E-26 | 2 | 98 | No hit | No description |
Gene3D | G3DSA:3.10.10.10 | 2.8E-8 | 2 | 88 | No hit | No description |
SMART | SM00356 | 6.4E-6 | 124 | 151 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.122 | 124 | 152 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-8 | 127 | 151 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 128 | 153 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 130 | 151 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.807 | 169 | 197 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 169 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-5 | 171 | 196 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-10 | 172 | 196 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 174 | 195 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.192 | 314 | 342 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-10 | 316 | 341 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 318 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 320 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-5 | 358 | 385 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 359 | 387 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 359 | 386 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-8 | 361 | 385 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
IRVCVDFKDL NKVCPKDVFP LSIPELMVDI ASTHEILSLM DGSSGYNQIK MAPKDVALIA 60 FRTSIEIFCY TVMPFGLRND GATYKRAMTN IFDELFDNKM CVHTNHSVIK YLMGTRAKGE 120 LPERVGQPDC QYFLRTGMCK FGATCKYHHP RDRQDARALG FNIFGFPMRQ DEKSCSYYMR 180 TGTCKFGVAC KFDHPQPAPG AVYPLTLTGS PAYRSTISSV APTPSMPFAG GISSWPSANG 240 QPYMSSPRMQ CLPAYVPVII PTTPGTIPGQ QGWSNYTGDV SQVTSPEVVG HTKTPKSKNK 300 AQPSPSYIEN LPERPDQPDC QYYLRTGSCK YGSTCKYHHP KDRISSAIGF LGPLGLPLRP 360 GHAVCSFYSM YGTCRFGSAC RFDHPLISYY NYALPEIYAP DPSSWFSNQS NPQTTLISFD 420 VSPPKVMKSE VTDEALPSDS DEYRNPPAQA TSPPHTALSS ESPLNQSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ol8_A | 6e-12 | 2 | 95 | 114 | 207 | Reverse transcriptase/ribonuclease H |
4ol8_B | 6e-12 | 2 | 95 | 114 | 207 | Reverse transcriptase/ribonuclease H |
4ol8_E | 6e-12 | 2 | 95 | 114 | 207 | Reverse transcriptase/ribonuclease H |
4ol8_F | 6e-12 | 2 | 95 | 114 | 207 | Reverse transcriptase/ribonuclease H |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020595421.1 | 0.0 | zinc finger CCCH domain-containing protein 12-like | ||||
TrEMBL | A0A2I0V9E0 | 0.0 | A0A2I0V9E0_9ASPA; Zinc finger CCCH domain-containing protein 3 | ||||
STRING | GSMUA_Achr3P28210_001 | 1e-120 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 2e-55 | C3H family protein |