PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_27014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 301aa MW: 33608.2 Da PI: 6.5144 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 228 | 262 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ PEQU_27014 228 KWPYPSESQKVALAESTGLDQKQINNWFINQRKRH 262 569*****************************885 PP | |||||||
2 | ELK | 39.7 | 1e-13 | 182 | 203 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ PEQU_27014 182 ELKGQLLRKYSGYLGSLKQEFL 203 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.5E-17 | 46 | 90 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.7E-21 | 48 | 87 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.9E-23 | 93 | 144 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-19 | 98 | 142 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.8E-10 | 182 | 203 | IPR005539 | ELK domain |
SMART | SM01188 | 1.2E-7 | 182 | 203 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 182 | 202 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.843 | 202 | 265 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.41E-20 | 204 | 279 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.4E-14 | 204 | 269 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-28 | 207 | 267 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.42E-13 | 214 | 266 | No hit | No description |
Pfam | PF05920 | 2.8E-17 | 222 | 261 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 240 | 263 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MENWSGGNNP LMIMPLLSST AAGSTNPLIL HHQPPPPPPS DGYDSTLIKA KIISHPQYPR 60 LLSAYVNLHK VGAPPEVVAR LEEACASSYI SSSGGGGGED PALDQFMEAY CEMLTKYEQE 120 LSKPFKEALL FLSRIDSQFK SLSLSLPPAP SQVGGELEKN GSSEDDIELC DNFVNPEAGD 180 RELKGQLLRK YSGYLGSLKQ EFLKKRKKGK LPKEARQQLL DWWARHYKWP YPSESQKVAL 240 AESTGLDQKQ INNWFINQRK RHWKPSEEMQ FVVMDASHPH YFMDGGFAGG NPFAIDCTPL 300 L |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 197 | 206 | LKQEFLKKRK |
2 | 203 | 207 | KKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020592706.1 | 0.0 | homeobox protein knotted-1-like LET6 | ||||
Swissprot | P46608 | 1e-123 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A2I0WGJ8 | 0.0 | A0A2I0WGJ8_9ASPA; Homeobox protein SBH1 | ||||
STRING | XP_008795979.1 | 1e-144 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21073 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-108 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
---|---|---|---|
|