PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24421
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 312aa    MW: 35624.3 Da    PI: 7.7954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24421genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++++  +G g+W++++r+ g+ R++k+c++rw +yl
       PEQU_24421 14 RGLWSPEEDEKLIKYISTYGHGCWSSVPRRAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding46.11.1e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E++l+++++  lG++ W+ Ia+++  gRt++++k++w++
       PEQU_24421  67 RGSFSPYEEKLIIELHSILGNR-WAQIAKHLT-GRTDNEVKNFWNS 110
                      899*******************.********9.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-26664IPR009057Homeodomain-like
PROSITE profilePS5129425.132965IPR017930Myb domain
SuperFamilySSF466893.63E-2912108IPR009057Homeodomain-like
SMARTSM007173.7E-141363IPR001005SANT/Myb domain
PfamPF002492.6E-161461IPR001005SANT/Myb domain
CDDcd001675.23E-131761No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129418.97166116IPR017930Myb domain
SMARTSM007174.9E-1466114IPR001005SANT/Myb domain
PfamPF002491.1E-1367110IPR001005SANT/Myb domain
CDDcd001673.01E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSHHSCCNKQ KVRRGLWSPE EDEKLIKYIS TYGHGCWSSV PRRAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPYEEKLIIE LHSILGNRWA QIAKHLTGRT DNEVKNFWNS TIKKKLISQA  120
VEGLSLPNLS NQIPPPPQDS LPIWSFHFHT SPFGNQSQPY NIPKIVQIYN PQNLQPNIKE  180
NPIALQLQHF SGSYGSISPC YHQQQQQPLQ NYHHDPPMFF DDISPLEFRS ESKGGLINTK  240
IDFVLDNQPP INDQVCFNST SSMPYLDSSN GYSNLMEYMY VLSGPESLAE ATCVDLNPNS  300
LLPGTFPSLE FV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592438.10.0transcription factor MYB58-like isoform X1
TrEMBLA0A2I0X3P51e-147A0A2I0X3P5_9ASPA; Transcription factor MYB86
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128133035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-75myb domain protein 26