PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_19611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NAC | ||||||||
Protein Properties | Length: 520aa MW: 58572.3 Da PI: 6.3612 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.6 | 3e-33 | 166 | 305 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 lp G++F+P+d+el+ ++L +kv+++ ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++t PEQU_19611 166 LPHGVKFDPSDQELL-QHLMAKVRKDGvdphpfINEFIPtVEEEdGICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGTRKRRKINtndhgDVRWHKT 262 699************.889999999986776553332333555546**********.677888899******************74444655788**** PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 gk+k+vl +ge+ g+kk++v+y + k+ekt+Wvmh+y+l PEQU_19611 263 GKTKPVLL-DGEHLGCKKIMVLYvsATKGGKAEKTNWVMHQYHL 305 ********.999***********6545777788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-38 | 151 | 324 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.173 | 166 | 324 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-15 | 167 | 305 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MPVVAHTERG GGERRRPHVQ VAQQVGFMGH SKRLGQRADA RTIQCASIST HPSFIENYEI 60 ASTLCTARSS QGIADRSGDH FGRSAVGNLE TLNHLTPTEA LKIPFSWRMT GASWLVDSKR 120 IAKKIKNASE RTDPGSTKWI SNPTRACPRC NCVIDNSDVI HEWPGLPHGV KFDPSDQELL 180 QHLMAKVRKD GVDPHPFINE FIPTVEEEDG ICYTHPQKLP GVKQDGSVSH FFHRTFKAYN 240 TGTRKRRKIN TNDHGDVRWH KTGKTKPVLL DGEHLGCKKI MVLYVSATKG GKAEKTNWVM 300 HQYHLGIGED EKNGEFVVSK IFYQQQFKPC ERSTVDPIIK TANEVAAETE IMASTGSLTH 360 EYHDECQDMI QSSEETSDQL KVDRDPMNET NNANPAAEKL DNQFFAKDHE TRELDNEGPA 420 QDSQSAEDPK WWEGESQFLL DSQQLAEGIA ICDEFLQSQS SYAEDEAVKP RKSCLSDYAS 480 IGVEYFRRDL KECQKLSREG NHSSYNEVDS TPEMRLSQLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020577921.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 1e-132 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2I0AG40 | 0.0 | A0A2I0AG40_9ASPA; NAC domain-containing protein 8 | ||||
STRING | XP_008800749.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-135 | NAC family protein |