PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_16233
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 497aa    MW: 54520.9 Da    PI: 8.9456
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_16233genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.9e-12153177226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C +++ t tCk+Gd+CkF H+
  PEQU_16233 153 GEKDCTYYMMTRTCKFGDSCKFDHP 177
                 7889********************8 PP
2zf-CCCH283.7e-09208234126
                 --S---SGGGGTS.--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                 ++++ C++f++t   CkyG +CkF+H+
  PEQU_16233 208 PGEPDCPYFLKTTqKCKYGLNCKFNHP 234
                 5789**********************8 PP
3zf-CCCH35.51.7e-11260284327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C f+a+tG Ck+G++CkF+H++
  PEQU_16233 260 EPVCAFYAKTGKCKFGGNCKFHHPK 284
                 789********************96 PP
4zf-CCCH33.76.1e-11333357226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++  C+f+++tG Ck+G +C+++H+
  PEQU_16233 333 GETDCPFYLKTGSCKFGTTCRYSHP 357
                 6789********************9 PP
5zf-CCCH31.62.7e-10418441326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C+++++tG+Ck+ +rCk++H+
  PEQU_16233 418 EIECDHYMKTGHCKFAERCKYHHP 441
                 568********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-4151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835151179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5153178IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9153177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4157176IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036207235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061207236IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-7209234IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-6257284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554257285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6260285IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9260284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4262283IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-7331358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939331359IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8333357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5334358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4337356IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5415442IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023415443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6418444IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7418441IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MSNQIYYSST YTSGGLGGYT LRAADPYLPT AVGSSRFSTD ALTVTDAGER TASLSSSQAN  60
GFKLPNVEIR GVGGAGSLSI GKIGGGQTSV TWLGVDGAGK AGSKRSAEAL YNQNILAYNS  120
IGQSDALLSK YSLHKRPRVV GASHLPLYPQ RPGEKDCTYY MMTRTCKFGD SCKFDHPIWV  180
PEGGIPDWKE VPLIPXXXPA AESLPQRPGE PDCPYFLKTT QKCKYGLNCK FNHPNEKLYS  240
STGIVESNGF YVDLPERPSE PVCAFYAKTG KCKFGGNCKF HHPKDILIQL AANNGPTSNN  300
DDASSGYSKQ TKSFVPFTPA LWHNSKGLPI RPGETDCPFY LKTGSCKFGT TCRYSHPDRY  360
VVTAPVTTPN IGHAYITPTA ATLPVGVINP AASFLPTLDA RFAQFGAATA VYPQRPGEIE  420
CDHYMKTGHC KFAERCKYHH PLDRSEPTAS FNRQTQQQAV KLTLAGLPRR EVHFFYYFQE  480
IYTRKTLNSY VFTYLTP
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573217.10.0zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q31e-139C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2I0WM510.0A0A2I0WM51_9ASPA; Zinc finger CCCH domain-containing protein 37
STRINGXP_010260864.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-141floral homeotic protein (HUA1)