PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_16193 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 30027.9 Da PI: 6.7031 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.7 | 2.8e-33 | 44 | 183 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWk 84 lp G++F+Ptd+el+ +L +kv ++ ++ e+i++v+ i++++P++Lp vk + + ++fF+++ k+y+tg+rk+r+++ + +W+ PEQU_16193 44 LPHGVKFDPTDHELL-WHLIAKVGKSGgsphpfIN--EFIPTVEkddgICYTHPQKLP-GVKMDGSVTHFFHRTFKAYNTGTRKRRKINtedhgDVRWH 138 699************.6677777666657765422..23444422235**********.566688999******************74444655788** PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l PEQU_16193 139 KTGKTKPVVL-DGDQQGCKKIMVLYasAVKGGKAEKTNWVMHQYHL 183 **********.9999**********5444777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-37 | 33 | 202 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.093 | 44 | 202 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-14 | 45 | 183 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MLGLKASVFS LCRFQQQQDF SVPVQVPTST TVDLPAVIQE WPGLPHGVKF DPTDHELLWH 60 LIAKVGKSGG SPHPFINEFI PTVEKDDGIC YTHPQKLPGV KMDGSVTHFF HRTFKAYNTG 120 TRKRRKINTE DHGDVRWHKT GKTKPVVLDG DQQGCKKIMV LYASAVKGGK AEKTNWVMHQ 180 YHLGTGEDEK DGEFVVSKIF YQQQFKPFER GRVEPIIENE ETGSGEMETV MCAGSSTPDY 240 HGENQHLIKI SEISDQADLI QTYSAEN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020576246.1 | 1e-174 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 1e-88 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2I0AG40 | 1e-114 | A0A2I0AG40_9ASPA; NAC domain-containing protein 8 | ||||
STRING | XP_008800749.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-90 | NAC family protein |