PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_16049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 44615.2 Da PI: 5.7999 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94 | 2.5e-29 | 55 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyW 83 lp+G++F+Ptd el+ e+L+ k+ k + ++e+i+++d i++++P++Lp vk++ + +fF +++++yatg +k+r+ ++ +W PEQU_16049 55 LPAGVKFDPTDVELL-EHLAGKAGVGKskahIFIDEFIPTLDgehgICYTHPENLP-GVKKDGSGAHFFYRTSNAYATGCKKRRKirseysesEERVRW 151 799************.899999877763444333345655555666**********.7778899********************85666666555889* PP NAM 84 katgkdkevlskkgelvglkktLvfyk..grapkgektdWvmheyrl 128 ++tgk+k+v++ +g ++g kk++v+yk g+ k+ k++Wvmh+y+l PEQU_16049 152 HKTGKTKPVVE-NGFQKGWKKIMVLYKsfGKGCKPDKANWVMHQYHL 197 ***********.999***********6446888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-35 | 40 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.301 | 55 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-12 | 56 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
RAWLVNSRGI AKKVKNATLY SNYQIRELGT EANRECPNCK YVIDNSDVSL DWPGLPAGVK 60 FDPTDVELLE HLAGKAGVGK SKAHIFIDEF IPTLDGEHGI CYTHPENLPG VKKDGSGAHF 120 FYRTSNAYAT GCKKRRKIRS EYSESEERVR WHKTGKTKPV VENGFQKGWK KIMVLYKSFG 180 KGCKPDKANW VMHQYHLGTD EEEKDGEFVV SKVFYQQHTK QVDRADTETL LNELVSSNIK 240 CGPRTPKTVA PEPPRAKMNS LSDVDQHDPL PLLEKRPEEE SVPSPLPIVL LKDERFGSAW 300 WAGESQAIQE PETEKIDESL FCHEVLFPFT SIGGSFLQVD SRVVADGNKE QLTRDVNSDD 360 GLPSLDGIDM DTLSDFHLSD LQFGSQESIM SWLDRI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 136 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575845.1 | 0.0 | NAC domain-containing protein 10-like isoform X1 | ||||
Swissprot | Q6NQK2 | 4e-84 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2H3WYJ4 | 1e-172 | A0A2H3WYJ4_PHODC; SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
STRING | XP_008775622.1 | 1e-173 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 8e-81 | NAC family protein |