PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_15512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 788aa MW: 87976.1 Da PI: 7.9675 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57.1 | 4.6e-18 | 697 | 777 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+ Li+ r ++++++++ + +++lWe vs+ m+++g+ rs+ qCk+ w +l ++y++ ++ ek r +++pyf+ ++ PEQU_15512 697 KWKPEEITRLIKERGDLNSKFQTVRGRMALWENVSSIMSAHGIIRSSAQCKSLWASLVQKYEESRNDEKIR-----KSWPYFNAVD 777 7*****************************************************************99986.....56****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.3E-67 | 20 | 270 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 2.49E-60 | 21 | 348 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 8.2E-25 | 33 | 230 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 1.1E-10 | 45 | 180 | IPR001279 | Metallo-beta-lactamase |
PROSITE profile | PS50090 | 6.609 | 694 | 754 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 9.8E-15 | 695 | 779 | No hit | No description |
CDD | cd12203 | 5.33E-17 | 696 | 761 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MDDSVQRKLE QFYEGPNGPP IRVLPIGGLG EIGMNCMLVG NYDRYILIDA GVMFPDYDEL 60 GVQKVIPDTA FIKRWSSKIE AVVITHGHED HIGALPWVIP ALDSNTPVYA SSFTMELIKK 120 RLKEFGIFIP SRLKVFKCRE KFLAGPFEVE PLRVTHSIPD CCGLVLRCKD GTVFHTGDWK 180 IDESPLDGKA FDRESLEELS KEGVTLMMSD STNVLSPGRT LSEAVVAESL LRHISSVKGR 240 VITTQFASNI HRIGSVKAAA DLTGRKLVFV GMSLRTYLDA AFRDGKAPMD PSTLVKVEDI 300 DAYPPNGLLI VTTGSQAEPR AALNLASFGG SHSLKLTKED VILYSAKVAF KYLLQVGQFM 360 VAVQYLLHQV YCEGKSLYFN YRWSASMVKK LSLSTHKLPQ SYSFTWLKMT NEKLGETALW 420 FSVSQVIKNG EMLGVSHLRN RRVLSNGFAL LGKENLQLMY SDGDKAFGTS EELCIDERLR 480 IAFDGILIVC MEISRPRHIN GSSQPCLKGK IRISTRCLWL DKGKLLDALY KAAHAALSSC 540 PVNCPLVHME RIVSEVLRKV VRKYCSRRPE VIAIAVENTV GALSEELRER IAGKTYGGFD 600 SSAMNQHLDI RMRKDSSSSF DEDTANVMRN LIETEAEDDY FVAEKSHVED PLLESEDLED 660 ENTSSVEHVK SSNASGGESM KVSEAKTGSP KPGKRNKWKP EEITRLIKER GDLNSKFQTV 720 RGRMALWENV SSIMSAHGII RSSAQCKSLW ASLVQKYEES RNDEKIRKSW PYFNAVDKIL 780 SAPQEAAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3bk1_A | 2e-63 | 21 | 578 | 17 | 562 | Metal dependent hydrolase |
3bk2_A | 2e-63 | 21 | 578 | 17 | 562 | Metal dependent hydrolase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020576926.1 | 0.0 | uncharacterized protein LOC110022373 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A2I0AGZ1 | 0.0 | A0A2I0AGZ1_9ASPA; Trihelix transcription factor GT-3a | ||||
STRING | XP_008811801.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4996 | 35 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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