PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 26408 Da PI: 7.9282 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C dC+k+Fs++ L H +H PEQU_14970 87 HQCRDCNKCFSSHQALGGHRVSH 109 79************999888777 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00055 | 184 | 206 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C + Fs+ L H+r+H PEQU_14970 184 HKCWVCEMEFSSGQALGGHMRKH 206 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.37E-6 | 86 | 109 | No hit | No description |
Pfam | PF13912 | 1.4E-4 | 86 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.972 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.37E-6 | 179 | 206 | No hit | No description |
SMART | SM00355 | 0.083 | 184 | 206 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.9E-9 | 184 | 208 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 186 | 206 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEESTKVKGK RTKRKRNHLL PPVVSSILSS TPSVEISESI TEEEEDTANC LLLFVGGRYN 60 PKPNEMDEAN MAVNITSQQC KAGNNVHQCR DCNKCFSSHQ ALGGHRVSHN KKSRLSIPLV 120 SEAMNVNSIQ LSINSFSSPA TIEVKIHKCW VCEMEFSSEV MNVNSIQLSI NSFSSPATIE 180 VKIHKCWVCE MEFSSGQALG GHMRKHRPPT STEPTNKKEN FKRFYLDLNL PPPCDD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020592811.1 | 1e-126 | zinc finger protein ZAT5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-22 | C2H2 family protein |