PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_13674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 138aa MW: 15289.6 Da PI: 7.1876 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.4 | 2.1e-07 | 6 | 49 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r+RR+ri ++++eL +l+P +++ a +L A +Y+k Lq PEQU_13674 6 VAARQRRKRISEKMQELGRLIPGG-----MRMNSAPMLLAAFKYVKFLQ 49 677*******************96.....59***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.719 | 1 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.75E-7 | 2 | 51 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.2E-11 | 3 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-7 | 5 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-10 | 6 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-5 | 7 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MSAQSVAARQ RRKRISEKMQ ELGRLIPGGM RMNSAPMLLA AFKYVKFLQA QYECKSAKNG 60 DLHVLLASPT IQQRLSAEGM CVVPKDLVDG LATGIEFQSE PLISSSTDSF NSEPFISDSM 120 DSFLQSFLKE DSKCFTDI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020268269.1 | 3e-35 | transcription factor bHLH53-like | ||||
Swissprot | Q9SA82 | 2e-20 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | A0A2H3YZA2 | 1e-29 | A0A2H3YZA2_PHODC; transcription factor bHLH52-like | ||||
STRING | XP_008806162.1 | 2e-30 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 8e-23 | bHLH family protein |
Publications ? help Back to Top | |||
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