PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_13291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 318aa MW: 36654.8 Da PI: 7.0223 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.6 | 2.2e-31 | 60 | 113 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+v gL ++hvkSHLQ+YR+ PEQU_13291 60 PRLRWTPDLHMCFVRAVERLGGQDRATPKLVLQLMNVRGLGIAHVKSHLQMYRS 113 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 56 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.775 | 56 | 116 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.38E-13 | 59 | 114 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-22 | 60 | 115 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 61 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDSACSEESE KPNLSEKDED DEEGEENPKT EGSSSNSTVE EGERKVSSGT VRQYNRSKIP 60 RLRWTPDLHM CFVRAVERLG GQDRATPKLV LQLMNVRGLG IAHVKSHLQM YRSKKVDDSG 120 QANPIRTLMD LEDQRNLYSH SHLSILNGFE QRYSNMRYSS SWIGPGFWNS MRPESYSPAA 180 DGSFLMHQRP LSNWDFHARS SFINVRANTS SVEAKPKHEE FNSMHDKEME KQQNLGMRSW 240 KREDNEPDLN LSLNIAPRKE KRKRTWEEDE VVDKRLCLSL SSTLSRQEEG LRRKGTMFRE 300 LETGNQQAKV TSTLDLTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 61 | 115 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 61 | 115 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 61 | 115 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 61 | 115 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020576831.1 | 0.0 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2I0X924 | 1e-170 | A0A2I0X924_9ASPA; Myb family transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-46 | G2-like family protein |