PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_11287 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRF | ||||||||
Protein Properties | Length: 201aa MW: 22461.2 Da PI: 9.6828 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.1 | 8.7e-25 | 82 | 124 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e PEQU_11287 82 LEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 124 69**************************************997 PP | |||||||
2 | QLQ | 62.1 | 1.5e-21 | 10 | 45 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l++Ky+a++ P+P++L+++i++ PEQU_11287 10 PFTASQWQELEHQALIFKYMASGIPIPSDLILPIRR 45 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.1E-11 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.295 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.9E-16 | 10 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.791 | 81 | 125 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.0E-20 | 83 | 124 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGGRSSSRYP FTASQWQELE HQALIFKYMA SGIPIPSDLI LPIRRSFLLD STTTSPSLVF 60 PPQTQLGWSC FQMGFGKKAE DLEPGRCRRT DGKKWRCSKE AYPDSKYCER HMHRGKNRSR 120 KPVEISLAAK TNHSSSSSSS SSSAQSPYLA NLSISTPETN YHLSCPFSNS SRPPWAHLSS 180 DSGASHLQLN SDQNVFLISH F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020582469.1 | 1e-137 | growth-regulating factor 1-like isoform X2 | ||||
Swissprot | Q6AWY8 | 6e-73 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | A0A2I0W1J7 | 1e-105 | A0A2I0W1J7_9ASPA; Growth-regulating factor 1 | ||||
STRING | XP_008786732.1 | 2e-75 | (Phoenix dactylifera) | ||||
STRING | OPUNC02G31900.1 | 4e-74 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-53 | growth-regulating factor 5 |