PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_10675

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Dof

Protein Properties

Length: 521aa MW: 56176.8 Da PI: 5.6681

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10675	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.1e-39	126	186	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s PEQU_10675 126 PDKVLQCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTS 186 78999*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	123	183	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-32	127	184	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.696	130	184	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	132	168	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MARVDSGAMS DGRDPAIKLF GRKIPLMEEQ SLVEEGEVAD LASAMEPMKA GEMDACKEMG 60 NTEVFAIETP KDLDPKESFN SSCMGNTIEE DQKTSTESAK EAEELKPEQD NKETEASGED 120 KVLKKPDKVL QCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR 180 KNKNTSSCYR HTVLTPDAVA SVQVDGSDLP HHEASACGFS SNKRAPLNCN GTILKFGPDV 240 PLCESMTSVL TLGEQKRASE LGFTTRENRE EPSCSSPATV SKHAENGFLE DAEQKASHLY 300 QNGLAPLHHL QCFSVPPWAF AWNPGWNNFA AAAAAAAAAA AMAADGSSSE PVPGQETGFV 360 APMSWTRPPL VTAPAFCTPT FPFPIVPASF WSCMPGWTNG PWNVPSVGKN NGLSPSSSAS 420 TSNCSGNGSP TLGKHYRDAT SKVEGNAEKS LWVPKTLRID DIDEAAKSSI FATLGIKPDE 480 GGLFKAFPSK SRKAEAADPT QLLHANPAAF SRSQSFHETT I

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MARVDSGAMS DGRDPAIKLF GRKIPLMEEQ SLVEEGEVAD LASAMEPMKA GEMDACKEMG  60
NTEVFAIETP KDLDPKESFN SSCMGNTIEE DQKTSTESAK EAEELKPEQD NKETEASGED  120
KVLKKPDKVL QCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR  180
KNKNTSSCYR HTVLTPDAVA SVQVDGSDLP HHEASACGFS SNKRAPLNCN GTILKFGPDV  240
PLCESMTSVL TLGEQKRASE LGFTTRENRE EPSCSSPATV SKHAENGFLE DAEQKASHLY  300
QNGLAPLHHL QCFSVPPWAF AWNPGWNNFA AAAAAAAAAA AMAADGSSSE PVPGQETGFV  360
APMSWTRPPL VTAPAFCTPT FPFPIVPASF WSCMPGWTNG PWNVPSVGKN NGLSPSSSAS  420
TSNCSGNGSP TLGKHYRDAT SKVEGNAEKS LWVPKTLRID DIDEAAKSSI FATLGIKPDE  480
GGLFKAFPSK SRKAEAADPT QLLHANPAAF SRSQSFHETT I

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583112.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2I0VSS0	0.0	A0A2I0VSS0_9ASPA; Cyclic dof factor 2
STRING	XP_008793337.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-75	cycling DOF factor 2