PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 233aa MW: 26821.9 Da PI: 5.0741 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.6 | 2.1e-20 | 5 | 87 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ +Li+a++e++++l+rg+lk+++Weev++ + ++ gf +++ +qC++k+e+l+kry+ ++ + + s++ +f +++ PEQU_09565 5 WTDQETAHLIDAYEERWNSLKRGQLKAQQWEEVAAEVaARCGFtvpSKTGTQCRHKIEKLRKRYRSERLRPVR------SSWTFFGRID 87 ***********************************9966778844456999**************99877776......4688887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.073 | 1 | 65 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-5 | 3 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 7.4E-21 | 4 | 89 | No hit | No description |
SMART | SM00595 | 1.4E-5 | 12 | 88 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
PGSPWTDQET AHLIDAYEER WNSLKRGQLK AQQWEEVAAE VAARCGFTVP SKTGTQCRHK 60 IEKLRKRYRS ERLRPVRSSW TFFGRIDRME RGSAPISALP ASSDEDEDSA EPRGSNTRSI 120 NGILREAAPW EDSRGSRSLG KRKRLPADEE EDDDDENDVE DGGDVGEMAA ELRRFGEGYV 180 RMERRRMDVM RELEREWMEM EVKRMEMIME AQRGLMETIA GAFSKKAKNS SDM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020580937.1 | 1e-169 | trihelix transcription factor ASIL1-like, partial | ||||
TrEMBL | A0A2I0W9V9 | 1e-123 | A0A2I0W9V9_9ASPA; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P04170_001 | 7e-72 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 6e-20 | Trihelix family protein |