PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_06159

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

bHLH

Protein Properties

Length: 379aa MW: 42415 Da PI: 9.8963

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_06159	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.3e-09	219	267	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR ri +++ Lr ll + p++K + +++L k+ +Y++ L PEQU_06159 219 LHHVIAERKRRVRISESLRDLRMLLRLP---PGTKKDHVTVLSKTKDYLNTL 267 5799**********************...****************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-12	215	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.57E-4	215	272	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-10	216	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.9	216	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-7	219	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-6	222	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
SCVPGLVFKQ KLPYIELEYF DLLNSASSLA QLEFYKKAVF IGCSCGEIEL GSLTSNNRSQ 60 IQLGELYMPA QNILSSSSTS SLKSLSVGSP EYTSLILSNP VTDQSIKNGQ TLTSQHQITM 120 DPYLLLPSPQ SADAALTRAL MAVFSSSGTD PQQQEKGRMN LSSSSFEPYG SIQASFESSF 180 SSEGQKMIKR SISLLRKVHA LNYAAARMHD KPPMSSSKLH HVIAERKRRV RISESLRDLR 240 MLLRLPPGTK KDHVTVLSKT KDYLNTLKVQ IKELEEKNRK LELQLKSNKQ AVPVPLTNSN 300 ERVEIQVVRV SESQQMNILI IVREEVRLID LLLKVLDRLK AMGIVNLTTI DASSSPTMSS 360 LTLQVQQVWK FTIYLFIYV

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

SCVPGLVFKQ KLPYIELEYF DLLNSASSLA QLEFYKKAVF IGCSCGEIEL GSLTSNNRSQ  60
IQLGELYMPA QNILSSSSTS SLKSLSVGSP EYTSLILSNP VTDQSIKNGQ TLTSQHQITM  120
DPYLLLPSPQ SADAALTRAL MAVFSSSGTD PQQQEKGRMN LSSSSFEPYG SIQASFESSF  180
SSEGQKMIKR SISLLRKVHA LNYAAARMHD KPPMSSSKLH HVIAERKRRV RISESLRDLR  240
MLLRLPPGTK KDHVTVLSKT KDYLNTLKVQ IKELEEKNRK LELQLKSNKQ AVPVPLTNSN  300
ERVEIQVVRV SESQQMNILI IVREEVRLID LLLKVLDRLK AMGIVNLTTI DASSSPTMSS  360
LTLQVQQVWK FTIYLFIYV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020573843.1	0.0	putative transcription factor bHLH041
TrEMBL	A0A2I0WPM4	1e-125	A0A2I0WPM4_9ASPA; Transcription factor bHLH041

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3977	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-06	bHLH family protein