PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_01751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | WOX | ||||||||
Protein Properties | Length: 229aa MW: 26108.4 Da PI: 6.6331 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 88 | 148 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +t++ql++Le+ F++ +ps+++++e+++kl ++++ +V++WFqN+Ra+ kk PEQU_01751 88 RQRWIPTSTQLQILENIFKQgYETPSKQKIAEITSKLakhgHVSDVKVYNWFQNKRARSKK 148 89*****************99**************************************98 PP | |||||||
2 | Wus_type_Homeobox | 92.2 | 4.8e-30 | 87 | 150 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Pt++Q++iLe+++k+G tP+k++i +it++L+++G+++d V++WFQN++aR+++kq PEQU_01751 87 ARQRWIPTSTQLQILENIFKQGYETPSKQKIAEITSKLAKHGHVSDVKVYNWFQNKRARSKKKQ 150 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.766 | 84 | 149 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-14 | 84 | 151 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-16 | 86 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.1E-10 | 86 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.28E-10 | 88 | 150 | No hit | No description |
Pfam | PF00046 | 3.3E-17 | 88 | 148 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MNDFHGRLYE EERAMGDLQG MLDGVLFMKV MTDEQIEVLR RQISIYATIC EQLVAMHRAF 60 TKTLAGNNFG TTSYNPSASA EVPKIAARQR WIPTSTQLQI LENIFKQGYE TPSKQKIAEI 120 TSKLAKHGHV SDVKVYNWFQ NKRARSKKKQ AVLLKSNAEQ ENEAEIESCS RKKMKMDENH 180 ENEEPELNRG EEEHASMDSA GVLCAQEQVN FYENSASLPS KWSHSFSSV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020592734.1 | 1e-165 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 1e-52 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A2I0AX28 | 2e-67 | A0A2I0AX28_9ASPA; WUSCHEL-related homeobox 8 | ||||
STRING | XP_008812362.1 | 2e-58 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-48 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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