PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s973611g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | Trihelix | ||||||||
Protein Properties | Length: 159aa MW: 17633.2 Da PI: 10.3898 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.7 | 7.1e-14 | 17 | 90 | 16 | 86 |
trihelix 16 emeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++e l+rg+l++ +We+v+ + +++ +s +qCk+k++nl+kryk + ++ +++ ++s++p+f+++e PDK_30s973611g006 17 GRGEGLNRGNLRGRDWEDVATIVsdrcDKQKAGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLAVSHWPWFKKME 90 5678899***********98777666699999**************************98.78889********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.6E-15 | 24 | 92 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MASFFPDFDF PTERARGRGE GLNRGNLRGR DWEDVATIVS DRCDKQKAGK SVEQCKNKID 60 NLKKRYKVEC QRLSSGGLAV SHWPWFKKME QIVGSSSSSS KTAGDEDKSG ALGGTGVVTR 120 QMKRSLLPLP LLFSILILSS MFSPTLSFFL RSGLFYANA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM076489 | 3e-83 | AM076489.1 Cocos nucifera partial mRNA for receptor-like kinase (CnLI gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026656058.1 | 6e-67 | uncharacterized protein LOC103723839 isoform X2 | ||||
TrEMBL | A0A3Q0HMU2 | 1e-65 | A0A3Q0HMU2_PHODC; uncharacterized protein LOC103723839 isoform X2 | ||||
STRING | XP_008813118.1 | 2e-65 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1935 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 4e-31 | Trihelix family protein |