PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s942371g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 272aa    MW: 29591.9 Da    PI: 9.3124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s942371g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.4e-152776355
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PDK_30s942371g002 27 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 76
                       9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-182585IPR016177DNA-binding domain
CDDcd000181.99E-252586No hitNo description
PROSITE profilePS5103219.2822684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-192684IPR001471AP2/ERF domain
SMARTSM003808.3E-342690IPR001471AP2/ERF domain
PfamPF008473.0E-102776IPR001471AP2/ERF domain
PRINTSPR003678.0E-52738IPR001471AP2/ERF domain
PRINTSPR003678.0E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKNMSRQEYV AHLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  60
EEAAEAYDVA AIKFRGVNAV TNFDITRYDV EKIMASPTLL SGELARRTKA IEAGNDCASV  120
QNSSRELDLT EENNSSASDW KMVLYQSPQQ TPQSSESLNH KSVTGVGDHR SSAALSVALH  180
GMVGMETVSS VNGVEDSGKI GNNHISNPSS LVTSLSSSRE GSPDRNGLSM LYSKPSSNFT  240
SPAPMSSWIP STQLRPTISM AQMPVFAAWN DA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697237.10.0LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z022e-88CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2H3ZLD10.0A0A2H3ZLD1_PHODC; LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor CRL5
STRINGXP_008784660.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.13e-66AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]