PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s938381g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C3H | ||||||||
Protein Properties | Length: 218aa MW: 24150.1 Da PI: 8.3245 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.9 | 1.6e-13 | 170 | 194 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G+ CkF+H++ PDK_30s938381g001 170 QPECQFYMKTGDCKFGAACKFHHPK 194 689********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.018 | 167 | 195 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-6 | 168 | 194 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 169 | 197 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.9E-11 | 170 | 194 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 173 | 195 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAKVLIIVCR TISNQLVQSI LNRTSWLSIP RFAIPVLDPL PVSSYYSVST WYGMRQQGVP 60 SIGMIELDNI NLFLVLEILP LSCSMCIRYQ WMSIMLCTHK CAHIYGPLGS VSSSESQQQA 120 PGTVQIHGSS RPSETSAGAQ GIVSSYRSSS ITMGQHALQK DNVFPERLDQ PECQFYMKTG 180 DCKFGAACKF HHPKERLITA PNCLLSPSGL PLRPLLEM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026661335.1 | 6e-70 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_026661337.1 | 6e-70 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_026661338.1 | 6e-70 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_026661339.1 | 3e-70 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_026661340.1 | 3e-70 | zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
Refseq | XP_026661341.1 | 3e-70 | zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
Swissprot | Q5JLB5 | 2e-41 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A3Q0I385 | 1e-68 | A0A3Q0I385_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
TrEMBL | A0A3Q0I392 | 8e-69 | A0A3Q0I392_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
TrEMBL | A0A3Q0I3G3 | 8e-69 | A0A3Q0I3G3_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
STRING | XP_008792910.1 | 2e-69 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.3 | 2e-23 | zinc finger nuclease 3 |
Publications ? help Back to Top | |||
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