PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s925571g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 524aa    MW: 56326.1 Da    PI: 5.8812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s925571g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11332377555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  PDK_30s925571g003 332 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 377
                        99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-17325387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-12325381No hitNo description
PROSITE profilePS5088817.263327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16329386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-9332377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MDDFTDPFLS SQTWPDTNTS ARSSWAGTAV SQTTSLLAGL SEAYGDAKNP RICAIPSSHI  60
IGNACTEELN LHSHDSTSSI FIHENIKYDI DKNMFPGEKL SLHNLHRQNS QPSLQDNVTQ  120
ESSFSLLGVI ESNSTAGTFG SDVNPSCSVA FPHSSLTMSA SIESNGGELS AFTQSLGDAH  180
SISSFPAMWP SSYPGVSSLM GQGRLQTFGF QGLESDNVIL RKTCVENGKF AQLEDLPAAS  240
LHEHNELHNP IFPSFSGGQQ NKLAGGDLQQ QERNGLHNLC LPSLASQPQM SSTKTAGIQI  300
TQSQSTPSTA GGCNEAVKPR VRARRGQATD PHSIAERLRR EKIAERMKNL QELVPNSNKT  360
DKASMLDEII DYVKFLQLQV KVLSMSRLGA AGAVVPLLTD SQTEGCGNLL LSSPSVRLGA  420
DLSESQDSLA FEQEVVELME ASVTMAMQYL QSKGLCLMPI ALATAISNQK GSSSSAIPPD  480
RRKPDVIHGV ICPSNQCIMD NGPTVKQEEA QKPKGNAREL KPKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784365.10.0uncharacterized protein LOC103703328
RefseqXP_008784366.10.0uncharacterized protein LOC103703328
RefseqXP_026658874.10.0uncharacterized protein LOC103703328
TrEMBLA0A2H3XIR60.0A0A2H3XIR6_PHODC; uncharacterized protein LOC103703328
STRINGXP_008784365.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.16e-63LJRHL1-like 3