PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s923431g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 27302.9 Da PI: 7.6333 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 83 | 102 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ PDK_30s923431g001 83 FSCPVCLKTFNRYNNMQMHM 102 89*****************9 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.2e-05 | 167 | 189 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ PDK_30s923431g001 167 FMCRKCGKAFAVRGDWRTHEKNC 189 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.31 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.66 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.6E-6 | 83 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.21E-7 | 148 | 187 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.8E-6 | 163 | 187 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 49 | 167 | 187 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.808 | 167 | 187 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 150 | 193 | 216 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSINDEADDG DDQAVTVALR IGLPNPGAAD LISTISSAPE DSGDKEAEGG DEVAPLCYPI 60 GRLNKGQYWI PTPSQILIGP TQFSCPVCLK TFNRYNNMQM HMWGHGSQYR KGPESLRGIQ 120 PTAMLRLPCY CCAPGCRNNI DHPRSKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG 180 DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGHGHAA YGIDCFEEDD EPSSEIEQDG 240 DPSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008795700.1 | 0.0 | zinc finger protein WIP2-like | ||||
Swissprot | Q9SVY1 | 1e-129 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A2H3Y9Z7 | 0.0 | A0A2H3Y9Z7_PHODC; zinc finger protein WIP2-like | ||||
STRING | XP_008795700.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-131 | C2H2 family protein |
Publications ? help Back to Top | |||
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