PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s909501g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 20891.9 Da PI: 5.3988 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.3 | 0.00015 | 31 | 48 | 38 | 55 |
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 ++Ka++L A+eY+k+Lq PDK_30s909501g002 31 MDKASVLGDAIEYVKQLQ 48 79***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-6 | 27 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-8 | 30 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.377 | 109 | 187 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MARGGPKNAQ NREKIRYLYL FKFFGNDSLD MDKASVLGDA IEYVKQLQEK VKTLEEQNTK 60 RTVESAVLVK KPQLSSEDDG SSWDENCEGL PSGESLPEIE AKMSENSVLV KIYCEKRSGV 120 LLKALSEIEK LHLNVINASV IPFASSHLDI TVVAQIDADF SMTVKDVVKK LNSAFRQFMG 180 RCQDSLV |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008785756.1 | 1e-100 | transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 3e-41 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2H3XMA8 | 2e-99 | A0A2H3XMA8_PHODC; transcription factor bHLH18-like | ||||
STRING | XP_008785756.1 | 1e-100 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-43 | bHLH family protein |