PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s900751g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 279aa    MW: 31828 Da    PI: 7.7151
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s900751g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-092032382055
                        HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        ++ +yps+ e+  LA+++gL+ +q+ +WF N+R ++
  PDK_30s900751g003 203 YNWPYPSEMEKVALAESTGLDPKQINNWFINQRKRH 238
                        4679*****************************885 PP
2ELK361.5e-12158179122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++Ll+KYsgyL+sL+qE+s
  PDK_30s900751g003 158 ELKRHLLKKYSGYLSSLRQELS 179
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.6E-85498IPR005540KNOX1
PfamPF037902.5E-125578IPR005540KNOX1
SMARTSM012564.1E-868115IPR005541KNOX2
PfamPF037919.6E-1281114IPR005541KNOX2
PfamPF037891.5E-9158179IPR005539ELK domain
SMARTSM011889.1E-7158179IPR005539ELK domain
PROSITE profilePS5121311.47158178IPR005539ELK domain
PROSITE profilePS5007112.924178241IPR001356Homeobox domain
SuperFamilySSF466895.99E-20179254IPR009057Homeodomain-like
SMARTSM003895.1E-14180245IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-27183244IPR009057Homeodomain-like
CDDcd000861.22E-12190242No hitNo description
PfamPF059203.8E-16198237IPR008422Homeobox KN domain
PROSITE patternPS000270216239IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MASPTPPPSS AAYGLSFYPA ALLQNPSPPT FKDEAGPSQY QSQKHGKMPQ GDVETIKAKI  60
ISHPQYPSLL GAYMDCQKDG YRDLLVKYRE ELARPLQEAT DFLKNVESQF NALTNGTWAR  120
FLSTDEKCEG VGFSEEDHVV SGEEGEHLEI DPRAKDKELK RHLLKKYSGY LSSLRQELSK  180
KKKKGKLPKE ARQRLLNWWE LHYNWPYPSE MEKVALAEST GLDPKQINNW FINQRKRHWK  240
PSEDMQFAVM DGFHPQNASA AALFMEGQFM GDGMYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260461e-35AC226046.1 Musa acuminata clone BAC MA4-72F16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798922.11e-150homeobox protein rough sheath 1-like
RefseqXP_010942047.11e-150homeobox protein rough sheath 1
SwissprotO041351e-101KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A2H3YHS31e-148A0A2H3YHS3_PHODC; homeobox protein rough sheath 1-like
STRINGXP_008798922.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-78KNOTTED-like from Arabidopsis thaliana