PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s900381g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 341aa    MW: 38422.9 Da    PI: 7.0405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s900381g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05261283123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk F  + + ++H +++
  PDK_30s900381g003 261 FMCRKCGKAFAVRGDWRTHEKNC 283
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.58177199IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-6177196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64177204IPR007087Zinc finger, C2H2
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-6242281No hitNo description
Gene3DG3DSA:3.30.160.609.0E-6248281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549261281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808261281IPR007087Zinc finger, C2H2
SMARTSM00355150287310IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MADPYTNFFK GYFNSFPFSS SNPSPPPLPL PTHGFHTNYT NYTTPYLQST SHFYSPPPSP  60
PLREALPLLS LGPSKEEEDT SFSAFEEGGH EKNKEQGEED NDEEGAVTVA LHIGLPSPSA  120
ADLISKVSST TVHEDKEVEE DGNGDATPLG YPAIGRLTKG QYWIPTPSQI LIGPTQFSCP  180
VCCKTFNRYN NMQMHMWGHG SQYRRGPESL RGTQPTAMLR LPCYCCAPGC RNNIDHPRSK  240
PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS  300
LKDHIKAFGH GHAAYGIDCF EEEDEPSSEI EQDCDHHHHS R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928863.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-138ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2H3YHE50.0A0A2H3YHE5_PHODC; zinc finger protein WIP2-like
STRINGXP_008798774.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]