PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s849551g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 401aa MW: 44251.9 Da PI: 5.3417

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s849551g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	105	154	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +k+L PDK_30s849551g004 105 RKVQKADREKLRRDRLNEQFLELGNALDPD----RPKNDKATILADTIQMLKDL 154 5677889******************997....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.913	104	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-12	104	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-7	105	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-7	105	158	No hit	No description
SuperFamily	SSF47459	9.55E-13	105	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-6	110	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MADGANGRAG GDVKAIFRQI YLTLKTELLE DPAFDFTDDA RQWIDKGALM DQWKPSEGFF 60 PDPAQTELPD NGFHRASDDL CQPPSRLPDP SQRVEQEVKD SIAARKVQKA DREKLRRDRL 120 NEQFLELGNA LDPDRPKNDK ATILADTIQM LKDLTAQVNR FKAEYASLSE ESRELTQEKN 180 ELREEKGTLK SEIDNLNAQY QQRLRVLYPW AAMDPSVIMG PPPAYPFPMP VPIPSGPIPI 240 HPSLQPYPFF RNQNPGTIPN SCLTYGPYAH PCNLQVEQPT TQCIHPHPHP SSNKSHSGSL 300 QDSRSKSSDR QQRSCGERSD DISDVATELE LKTPGSAAPS SHSKEANDQD LSSEVRKGKQ 360 WPSERKGSGG SDGSSSSRCS SSGGLPDSSS NSVGDSSVAK N

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MADGANGRAG GDVKAIFRQI YLTLKTELLE DPAFDFTDDA RQWIDKGALM DQWKPSEGFF  60
PDPAQTELPD NGFHRASDDL CQPPSRLPDP SQRVEQEVKD SIAARKVQKA DREKLRRDRL  120
NEQFLELGNA LDPDRPKNDK ATILADTIQM LKDLTAQVNR FKAEYASLSE ESRELTQEKN  180
ELREEKGTLK SEIDNLNAQY QQRLRVLYPW AAMDPSVIMG PPPAYPFPMP VPIPSGPIPI  240
HPSLQPYPFF RNQNPGTIPN SCLTYGPYAH PCNLQVEQPT TQCIHPHPHP SSNKSHSGSL  300
QDSRSKSSDR QQRSCGERSD DISDVATELE LKTPGSAAPS SHSKEANDQD LSSEVRKGKQ  360
WPSERKGSGG SDGSSSSRCS SSGGLPDSSS NSVGDSSVAK N

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788362.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	1e-77	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2H3XSZ7	0.0	A0A2H3XSZ7_PHODC; transcription factor bHLH121
STRING	XP_008788362.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11767	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.2	7e-68	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]