PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s837171g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 318aa    MW: 35201.9 Da    PI: 8.4621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s837171g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-12149194555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR+++ ++f eL  ++P +     kK +Ka++Le+A +Y+k+L+
  PDK_30s837171g001 149 HVIAERKRREKLSQRFIELSAVIPGL-----KKRDKASVLEEAAKYVKQLE 194
                        899***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-15147207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.81E-11149198No hitNo description
PfamPF000101.2E-9149194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.484251318IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDESSFIYEC DISSFNEFTP QRVAPALVGG FQQPLSSESY TSYPPFNPVE TPSRIGLIER  60
PKKIQKINSW NSRTTEQNPT LGPDASSADS LLFRNSNSPN DELRRASASQ ENMRALVSNG  120
SAQDYETLVQ QGSKMIKTGS MPSQAHDEHV IAERKRREKL SQRFIELSAV IPGLKKRDKA  180
SVLEEAAKYV KQLEARVKTI EDQTAKRTVE SVVLVRKSKL SADADGSSSS GCPAEKPLPD  240
IEAMLSEKTV LIRIHCKNHR GVLARLVSEI ENVHLTVTNA SVMPFPRSSI HITMTAKVEE  300
EFSMALGELV RKLNSALS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157ERKRRE
2153158RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943830.20.0transcription factor bHLH18-like
SwissprotQ9T0724e-47BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H3ZN281e-141A0A2H3ZN28_PHODC; transcription factor bHLH18-like
STRINGXP_008787834.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-46bHLH family protein