PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s829751g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 621aa    MW: 68939.4 Da    PI: 8.2643
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s829751g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.6e-12288344155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  PDK_30s829751g001 288 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 344
                        78*******************433.44555535555.779999**************98 PP
2AP246.11.2e-14389438355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PDK_30s829751g001 389 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 438
                        9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.89E-18288351No hitNo description
SuperFamilySSF541711.9E-14288354IPR016177DNA-binding domain
PfamPF008475.5E-9288344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-12289353IPR001471AP2/ERF domain
PROSITE profilePS5103217.174289352IPR001471AP2/ERF domain
SMARTSM003802.1E-22289358IPR001471AP2/ERF domain
PRINTSPR003674.6E-6290301IPR001471AP2/ERF domain
CDDcd000182.33E-24387448No hitNo description
SuperFamilySSF541711.57E-17387447IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-18388446IPR001471AP2/ERF domain
SMARTSM003804.4E-33388452IPR001471AP2/ERF domain
PROSITE profilePS5103219.203388446IPR001471AP2/ERF domain
PfamPF008471.7E-9389438IPR001471AP2/ERF domain
PRINTSPR003674.6E-6428448IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MDIYLPLSPH HHPHNHQNHH HHHHHHQEEG FAGGGEGGGN VGLGTPLPLL PICSDGSLCL  60
LEPLSKPPHG APDWNYEASM AATFTNKSAD EEREGPKLED LLGGYSENIN KESQSHQSIS  120
SFHDFYYHNP TSPSININMP PSFSNGNKEK EEEIQNSYKL FQSFHQSKQS FDQTYNLKPQ  180
FLMPNHNPVT NSTYSVGLDG AASISGFKSR LRQNLSTPME KQLAEAFECN SQSLTLSMSP  240
SVPFGANEII PAASSHFSDS ARNYLVAKPM NQEPIPRKSS ETFGQRTSQY RGVTRHRWTG  300
RYEAHLWDNS CRKEGQTRKG RQGGYDKEEK AARAYDLAAL KYWGPTTQLN FSLSSYEKEI  360
EEMKNMTRQE FVAYLRRNSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS  420
TQEEAAEAYD IAAIKFRGLN AVTNFDITKY DVKRICSSSS LIAGDLAKRP PKSSLSLAEH  480
TILPGRHDEP LEPPNSARSI VNSPSLIAGD LAKRSPKNSL SLGEHTILTG RHDEPLEPPN  540
SARSVVNSVV SSSMSNADST RSGRPGRGHA VPLNALKHEN SDQNGNGHGG VRGNMDWMTA  600
EARPTGFQVA YQLPMFALWN K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704760.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A3Q0I1Y40.0A0A3Q0I1Y4_PHODC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_008786729.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-124AP2 family protein