PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s823221g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 420aa    MW: 46485.4 Da    PI: 9.1217
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s823221g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.7e-11209265155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a +k++g
  PDK_30s823221g002 209 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLASLKYWG 265
                        78*******************433.44555535555.779999*************998 PP
2AP248.12.9e-15308359155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PDK_30s823221g002 308 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 359
                        78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-8209265IPR001471AP2/ERF domain
CDDcd000183.92E-17209275No hitNo description
SuperFamilySSF541711.44E-14209275IPR016177DNA-binding domain
SMARTSM003804.9E-20210279IPR001471AP2/ERF domain
PROSITE profilePS5103217.253210273IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12210275IPR001471AP2/ERF domain
PRINTSPR003671.9E-6211222IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18308369IPR016177DNA-binding domain
PfamPF008475.0E-10308359IPR001471AP2/ERF domain
CDDcd000181.56E-24308369No hitNo description
SMARTSM003801.3E-33309373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18309367IPR001471AP2/ERF domain
PROSITE profilePS5103219.045309367IPR001471AP2/ERF domain
PRINTSPR003671.9E-6349369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MATAPTGSNQ EGKGPKLEDF LGGYSENANE ENHHHPVSNY HDLYYQSPDG PGINVNMPPS  60
FSPDERGTEE GIRSSYHFLQ AFHHPNHSFQ EIPSLKPQFL VPSSNSNPTP VPNSMYNVGM  120
DGPASISGIK SWLRQNQYAP EKQSTEPSEC NIQSLTLSMS PGMHSGSGEM VPASSSPAPA  180
DGPKCPNAKA TTREPVPRKS IETFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK  240
GRQGGYDKEE KAARAYDLAS LKYWGPAANI NFPLSAYEKE LEEMKHMTRQ EFVANLRRKS  300
SGFSRGASVY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGV  360
NAVTNFDISR YDVKRICSSS HLITGDLAKR SPRATPAPSE PSTDADRLAR AITNSATQSP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787841.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ1PFE11e-126AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2H3XRX80.0A0A2H3XRX8_PHODC; AP2-like ethylene-responsive transcription factor AIL7
STRINGXP_008787841.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-121AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]