PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s798461g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 29087.4 Da PI: 5.7419 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 120 | 170 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrd + k +r++lg+f taeeAa a+++a+++++g PDK_30s798461g001 120 HFRGVRRRP-WGKFAAEIRDtSR---KGARIWLGTFNTAEEAALAYDKAALRMRG 170 79*******.**********331...34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.86E-29 | 119 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 120 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-23 | 120 | 180 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.275 | 120 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-37 | 120 | 184 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 120 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MASAFDRCEA NDKLLENVWS SFITESAPDS CSSDGSHKKP AASREWDEMP RLGGGGENLA 60 VLQRLPSLGR WISMGAETWD ALLGEITTSN SCETSLDSGY DACSSSKPKA LAAEKVTPKH 120 FRGVRRRPWG KFAAEIRDTS RKGARIWLGT FNTAEEAALA YDKAALRMRG QKARLNFPME 180 KVAEASEGAH LGIEGSTACP VYGCIKTNHN PRKRTAREWD SHDEVPAEPP AWERNSGIEG 240 RGSNQADVVE LQDLGSDYLE NLLSSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 119 | 179 | 4 | 64 | ATERF1 |
3gcc_A | 1e-27 | 119 | 179 | 4 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008811549.2 | 0.0 | ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A2H3ZCS4 | 0.0 | A0A2H3ZCS4_PHODC; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_008811549.1 | 1e-140 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 8e-26 | ethylene response factor 1 |