PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s798461g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 266aa    MW: 29087.4 Da    PI: 5.7419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s798461g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19120170255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +++GVr+++ +g+++AeIrd  +   k +r++lg+f taeeAa a+++a+++++g
  PDK_30s798461g001 120 HFRGVRRRP-WGKFAAEIRDtSR---KGARIWLGTFNTAEEAALAYDKAALRMRG 170
                        79*******.**********331...34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.86E-29119178No hitNo description
Gene3DG3DSA:3.30.730.101.3E-31120179IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-23120180IPR016177DNA-binding domain
PROSITE profilePS5103223.275120178IPR001471AP2/ERF domain
SMARTSM003801.5E-37120184IPR001471AP2/ERF domain
PfamPF008471.8E-14120170IPR001471AP2/ERF domain
PRINTSPR003672.1E-10121132IPR001471AP2/ERF domain
PRINTSPR003672.1E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASAFDRCEA NDKLLENVWS SFITESAPDS CSSDGSHKKP AASREWDEMP RLGGGGENLA  60
VLQRLPSLGR WISMGAETWD ALLGEITTSN SCETSLDSGY DACSSSKPKA LAAEKVTPKH  120
FRGVRRRPWG KFAAEIRDTS RKGARIWLGT FNTAEEAALA YDKAALRMRG QKARLNFPME  180
KVAEASEGAH LGIEGSTACP VYGCIKTNHN PRKRTAREWD SHDEVPAEPP AWERNSGIEG  240
RGSNQADVVE LQDLGSDYLE NLLSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27119179464ATERF1
3gcc_A1e-27119179464ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811549.20.0ethylene-responsive transcription factor 1B-like
TrEMBLA0A2H3ZCS40.0A0A2H3ZCS4_PHODC; ethylene-responsive transcription factor 1B-like
STRINGXP_008811549.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-26ethylene response factor 1