PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s785961g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Dof

Protein Properties

Length: 512aa MW: 55567.2 Da PI: 7.3552

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s785961g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8.4e-40	99	159	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s PDK_30s785961g004 99 PDKILPCPRCDSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGSGRRKNKHSA 159 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	96	156	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	101	157	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.91	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MADARDPAIK LFGRTIPLPE GQAQDERREV IDTEVKDSIS DAAEKLDQTK PVSCSGSNSG 60 KEDDHHMSSR DDNAVADPKP EKDQTEAHAS IQEKVLKKPD KILPCPRCDS LDTKFCYYNN 120 YNVNQPRHFC KNCQRYWTAG GTMRNVPVGS GRRKNKHSAS HCHYVTSDGM PCNRVDASDS 180 CSHQALPAGL SAPMRPLKGN GTVLKFGSEA PLCESMASVL SLGEQKRNAE TDFSAGGENR 240 EEASCKSSVT PSNCVENDHH EIPVHIEQNG LQGYCNGLTL MHHLQSFPGP PWIYPLHPGW 300 NSVSSIAAGQ CSSELVYRPE NGSPNPVPWC PPMMTTPAFC APTIPFQYVP SSFWGCMSSC 360 PSGILNIPWV GSNGGLSPSS SASSRGCSGN SSPNLGKHSR DAALQSETEK SLWVPKTLRI 420 DDPDEAAKSS IWATLGIRPH KSIKKGGIFK AFHSKTENKG HTTDAAQLVD TRSIFGLQVL 480 TVINVLFSRH AAQVLLANPA ALTRSQTFQE ST

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MADARDPAIK LFGRTIPLPE GQAQDERREV IDTEVKDSIS DAAEKLDQTK PVSCSGSNSG  60
KEDDHHMSSR DDNAVADPKP EKDQTEAHAS IQEKVLKKPD KILPCPRCDS LDTKFCYYNN  120
YNVNQPRHFC KNCQRYWTAG GTMRNVPVGS GRRKNKHSAS HCHYVTSDGM PCNRVDASDS  180
CSHQALPAGL SAPMRPLKGN GTVLKFGSEA PLCESMASVL SLGEQKRNAE TDFSAGGENR  240
EEASCKSSVT PSNCVENDHH EIPVHIEQNG LQGYCNGLTL MHHLQSFPGP PWIYPLHPGW  300
NSVSSIAAGQ CSSELVYRPE NGSPNPVPWC PPMMTTPAFC APTIPFQYVP SSFWGCMSSC  360
PSGILNIPWV GSNGGLSPSS SASSRGCSGN SSPNLGKHSR DAALQSETEK SLWVPKTLRI  420
DDPDEAAKSS IWATLGIRPH KSIKKGGIFK AFHSKTENKG HTTDAAQLVD TRSIFGLQVL  480
TVINVLFSRH AAQVLLANPA ALTRSQTFQE ST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787992.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2H3XS55	0.0	A0A2H3XS55_PHODC; cyclic dof factor 2-like
STRING	XP_008787992.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-71	cycling DOF factor 2