PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s769691g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 823aa MW: 89612.1 Da PI: 4.3531

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s769691g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	75	97	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+ +F +k+++ rH+ + H PDK_30s769691g001 75 ECHACNLTFGDKDTYLRHQLSfH 97 7******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.66	74	97	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	76	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.26	121	143	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.556	121	148	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	123	143	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence Send to blast
MYCPEAYRNI PNFTFLNLWD MQQAAGLTHQ EGIAKENGSL SSVTPISSYS DDNQKQVVLY 60 RVEKQTNNEL KSILECHACN LTFGDKDTYL RHQLSFHQRS AKRRRLGKSI GNGVIVKDGK 120 YECQFCHKTF SERHRYNGHI GAHVRYQGLS AEALPDDITT RNIFNPSPLA AVPYGFSEMT 180 DLAEQNEETC NAKSADELHV DSSQCKIDSK NPGIDHNAKS GGSETTEVAC TSISFDDQNN 240 DRNLTNYKSN EILQERNITD DKFNACMDAI SPSVVDVNNA AQCCSSVTTQ EASTSKSVDD 300 QANNVDMINC KSEEVVEASN VGDAKPSEGQ VNDCDMGGHK SEEVIEASNT KDVRPDASSD 360 AVSSPLKNVD NATCESIVEI GQSSSMSISV DNISEYAMTG YKSEEVVDIN NAMAVKPIAF 420 VESISPSHIN LDTVTCKTNN EIDLSSCTVI PEIGKYGTDQ KVNSEIHLIT MSGNGSTYGI 480 DTFENDIFTS SMGENVLVEL DTSGNGLKTQ FARSDSLSDK EPVTENILPG EFNAACIDTT 540 FVNGHNGGVE TDADCTFDID MKESVLEEMD KPGNELENCF NSSNAECEEV VPSDVVANND 600 GTNYLQLNVS GASSWVHSSH GVPILDMIPE QEHFGKCYLC SIMEALTCWA FLSIVALLVS 660 YVPLLREHAG IGQPVFDCED ELSSVGQKRE NLPGFEELRL GASSSSEFVC LDGQESSSVP 720 GPSIELGYAT ALQNGSCSSV QLGWDISPKM VSGSGNSAMM VVLLNYNLIP SASCARHVRQ 780 RFQALAGGEP PFHRMARKPE LDTAAIQSLS IKYPSSFYQR TKS

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence Send to blast

MYCPEAYRNI PNFTFLNLWD MQQAAGLTHQ EGIAKENGSL SSVTPISSYS DDNQKQVVLY  60
RVEKQTNNEL KSILECHACN LTFGDKDTYL RHQLSFHQRS AKRRRLGKSI GNGVIVKDGK  120
YECQFCHKTF SERHRYNGHI GAHVRYQGLS AEALPDDITT RNIFNPSPLA AVPYGFSEMT  180
DLAEQNEETC NAKSADELHV DSSQCKIDSK NPGIDHNAKS GGSETTEVAC TSISFDDQNN  240
DRNLTNYKSN EILQERNITD DKFNACMDAI SPSVVDVNNA AQCCSSVTTQ EASTSKSVDD  300
QANNVDMINC KSEEVVEASN VGDAKPSEGQ VNDCDMGGHK SEEVIEASNT KDVRPDASSD  360
AVSSPLKNVD NATCESIVEI GQSSSMSISV DNISEYAMTG YKSEEVVDIN NAMAVKPIAF  420
VESISPSHIN LDTVTCKTNN EIDLSSCTVI PEIGKYGTDQ KVNSEIHLIT MSGNGSTYGI  480
DTFENDIFTS SMGENVLVEL DTSGNGLKTQ FARSDSLSDK EPVTENILPG EFNAACIDTT  540
FVNGHNGGVE TDADCTFDID MKESVLEEMD KPGNELENCF NSSNAECEEV VPSDVVANND  600
GTNYLQLNVS GASSWVHSSH GVPILDMIPE QEHFGKCYLC SIMEALTCWA FLSIVALLVS  660
YVPLLREHAG IGQPVFDCED ELSSVGQKRE NLPGFEELRL GASSSSEFVC LDGQESSSVP  720
GPSIELGYAT ALQNGSCSSV QLGWDISPKM VSGSGNSAMM VVLLNYNLIP SASCARHVRQ  780
RFQALAGGEP PFHRMARKPE LDTAAIQSLS IKYPSSFYQR TKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	105	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026660781.1	0.0	LOW QUALITY PROTEIN: uncharacterized protein LOC103707977
TrEMBL	A0A3Q0I1M2	0.0	A0A3Q0I1M2_PHODC; LOW QUALITY PROTEIN: uncharacterized protein LOC103707977
STRING	XP_008790938.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2687	14	19