PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s759111g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | TALE | ||||||||
Protein Properties | Length: 142aa MW: 16707.9 Da PI: 9.0411 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 5.9e-10 | 69 | 104 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ PDK_30s759111g001 69 YKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRH 104 4579*****************************985 PP | |||||||
2 | ELK | 40 | 8e-14 | 24 | 45 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLg+LkqEF+ PDK_30s759111g001 24 ELKGQLLRKYSGYLGGLKQEFL 45 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 3.9E-7 | 24 | 45 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.3E-10 | 24 | 45 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.877 | 24 | 44 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.908 | 44 | 107 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.48E-20 | 46 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.4E-13 | 46 | 111 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-29 | 49 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.85E-12 | 56 | 108 | No hit | No description |
Pfam | PF05920 | 1.7E-17 | 64 | 103 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
RNGSSEEEFD ACENYVDPQA EDRELKGQLL RKYSGYLGGL KQEFLKKRKK GKLPKEARQQ 60 LLDWWNRHYK WPYPSESQKL ALAQSTGLDQ KQINNWFINQ RKRHWKPSEE MQLVVMDTAH 120 PHYFTDSSLG NPFPLDCAPA LL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 48 | LKQEFLKKRK |
2 | 45 | 49 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ890420 | 1e-164 | DQ890420.1 Elaeis guineensis class I KNOX-like 1 protein (KNOX1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787080.1 | 1e-103 | homeobox protein knotted-1-like 4 | ||||
Swissprot | O22299 | 1e-74 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | A0A2H3XQ32 | 1e-101 | A0A2H3XQ32_PHODC; homeobox protein knotted-1-like 4 | ||||
STRING | XP_008787080.1 | 1e-102 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21073 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 2e-69 | KNOX/ELK homeobox transcription factor |