PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s752671g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 355aa    MW: 39893.9 Da    PI: 7.4215
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s752671g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-092783122155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        k +yps++e+  LA+++gL+++q+ +WF N+R ++
  PDK_30s752671g001 278 KWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 312
                        669*****************************885 PP
2ELK37.84.1e-13232253122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+Ll+KYsgyL+sL+qE+s
  PDK_30s752671g001 232 ELKHHLLKKYSGYLSSLRQELS 253
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.6E-2289133IPR005540KNOX1
PfamPF037904.0E-2290132IPR005540KNOX1
SMARTSM012563.4E-23140191IPR005541KNOX2
PfamPF037911.6E-20145190IPR005541KNOX2
SMARTSM011882.8E-7232253IPR005539ELK domain
PfamPF037893.6E-10232253IPR005539ELK domain
PROSITE profilePS5121311.523232252IPR005539ELK domain
PROSITE profilePS5007112.762252315IPR001356Homeobox domain
SuperFamilySSF466891.28E-19253328IPR009057Homeodomain-like
SMARTSM003892.2E-12254319IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-27257317IPR009057Homeodomain-like
CDDcd000869.45E-12264316No hitNo description
PfamPF059201.3E-16272311IPR008422Homeobox KN domain
PROSITE patternPS000270290313IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEQFSQLGGR PRGGGFIYAS SSVATASTTT TTTPPTTGLA APPITASMSI YSGPNPNANT  60
LPRLHPPKPE GSSSSSSHHY PFARPTDVDA MKARIISHPH YSNLLKAYMD CQKVGAPPEV  120
ADRLLAVARE FEARQRAGVG CRDPPADPEL DQFMEAFYHL LVKYREEITR PLQESMDFLR  180
RVESQLNSLT NGSFHILSSD EKRGVCSSEE DQEASGGGTE LPEIDPCTED AELKHHLLKK  240
YSGYLSSLRQ ELSKKKKKGK LPKEARQKLL GWWELHYKWP YPSETEKVAL AESTGLDQKQ  300
INNWFINQRK RHWKPSEDMQ FVVMDGYHPQ NAAALYMDGH FMGDGLYLRE RERLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714GGRPRGGG
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785712.10.0homeotic protein knotted-1-like
SwissprotQ413301e-136KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2H3XLY30.0A0A2H3XLY3_PHODC; homeotic protein knotted-1-like
STRINGXP_008785712.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-112KNOTTED-like from Arabidopsis thaliana