PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s704841g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family BBR-BPC
Protein Properties Length: 351aa    MW: 39258.4 Da    PI: 10.2828
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s704841g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind387.22.5e-11813511301
          GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 
                        mdd g+re  r+k+ +y+        p+++lken ++++m+++aerd++i+ern+al+ekkaa+aerdma lqrd+a+aern+a++erdn++
  PDK_30s704841g002   1 MDDGGQREnvRHKTdQYKqvhaqwmmPQHQLKENHTIKIMAIMAERDNAIQERNIALAEKKAALAERDMAILQRDAAIAERNNAIMERDNAI 92 
                        99***99999***999*99*999999778*************************************************************** PP

          GAGA_bind  82 lalllvensla.....salpvgvqvlsgtksidslqqlse.......pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpk 160
                        +al++++++       sa+p+g+++ +gtk+i+++qq++        pql+d +++ +re++++ea+pi++a e++ + +k k+ ++++k++
  PDK_30s704841g002  93 AALQYARENGLngngaSACPPGCTAPRGTKHIHHHQQQHLqhihpspPQLSDAPYNhTREMHITEAFPISTASESIAKGRKAKRPRKETKAQ 184
                        ****9887766699999*****************9995545699************9*******************9999999888888888 PP

          GAGA_bind 161 ekkakkkkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYk 224
                        ++ +kk  k+++ks+k   ++ +  r                            +++e+k +dl+ln+v++De+t+P+PvCsCtG+ + CYk
  PDK_30s704841g002 185 NSPSKKSSKSPRKSRKGGGEDLN--RqvtiakpasewrneirggddlnkqvaltKHQEWKGQDLGLNQVTFDEATMPTPVCSCTGKYQPCYK 274
                        88887777766666554444443..235899999*******************9999*********************************** PP

          GAGA_bind 225 WGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        WGnGGWqSaCCttt+S+yPLPv++++r+aR++grKmS+gaf+klL++LaaeG+dls+pvDLkd WAkHGtn+++ti+
  PDK_30s704841g002 275 WGNGGWQSACCTTTLSMYPLPVMPNKRHARVGGRKMSGGAFRKLLSRLAAEGHDLSQPVDLKDNWAKHGTNRYITIK 351
                        ****************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062176.1E-1021351IPR010409GAGA-binding transcriptional activator
SMARTSM012265.1E-1581351IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDDGGQRENV RHKTDQYKQV HAQWMMPQHQ LKENHTIKIM AIMAERDNAI QERNIALAEK  60
KAALAERDMA ILQRDAAIAE RNNAIMERDN AIAALQYARE NGLNGNGASA CPPGCTAPRG  120
TKHIHHHQQQ HLQHIHPSPP QLSDAPYNHT REMHITEAFP ISTASESIAK GRKAKRPRKE  180
TKAQNSPSKK SSKSPRKSRK GGGEDLNRQV TIAKPASEWR NEIRGGDDLN KQVALTKHQE  240
WKGQDLGLNQ VTFDEATMPT PVCSCTGKYQ PCYKWGNGGW QSACCTTTLS MYPLPVMPNK  300
RHARVGGRKM SGGAFRKLLS RLAAEGHDLS QPVDLKDNWA KHGTNRYITI K
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779949.10.0barley B recombinant-like protein D isoform X2
RefseqXP_008779953.10.0barley B recombinant-like protein D isoform X2
RefseqXP_008779965.10.0barley B recombinant-like protein D isoform X2
RefseqXP_008779973.10.0barley B recombinant-like protein D isoform X2
RefseqXP_017696678.10.0barley B recombinant-like protein D isoform X2
RefseqXP_017696687.10.0barley B recombinant-like protein D isoform X2
RefseqXP_026657750.10.0barley B recombinant-like protein D isoform X2
RefseqXP_026657752.10.0barley B recombinant-like protein D isoform X2
SwissprotQ5VSA81e-141BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A2H3ZJS80.0A0A2H3ZJS8_PHODC; barley B recombinant-like protein D isoform X2
STRINGXP_008779916.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-110basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]