PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s701111g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 315aa    MW: 34622.6 Da    PI: 9.7964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s701111g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12159205454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + ErrRR+++N +f+eLr llP+     sk  +Ka++L+ + +Y++ L
  PDK_30s701111g001 159 HHVISERRRREKLNGSFQELRILLPPG----SKQKDKASVLTSTRNYLSTL 205
                        58899*********************7....57789************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.29E-11154209No hitNo description
PROSITE profilePS5088814.462155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15155223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-14159223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9160205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-11161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
GSPEYSSLLN NMVYGSFIPD PSKELIAKVA AQPSPAVFPP PQAAMQACSQ RRSARFPILG  60
DDDEAAITRA MMAVISSSSS SSYSSSPPLI SRTPQEAQNH QLGAFKPYNL ALAPKLEPKN  120
GSCGQKMIKK SISISKRINW SSAEARSKEP RAASSNQLHH VISERRRREK LNGSFQELRI  180
LLPPGSKQKD KASVLTSTRN YLSTLKGQIY ELEEKNRKLE MRLPSTDETQ ETTGSSGGVE  240
VEIIKASDLT TTTELQHINF GLTVKAECDI ISLVLHVLQC LKAMRLTSLL SVDAYAFSSQ  300
MNLFARVNIE LQIKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERRRRE
2164169RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797773.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A2H3YFA60.0A0A2H3YFA6_PHODC; putative transcription factor bHLH041 isoform X1
STRINGXP_008797772.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-22bHLH family protein