PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s657001g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 349aa    MW: 38402.4 Da    PI: 6.5248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s657001g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11174220354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        + h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L  AveYIk+L
  PDK_30s657001g004 174 QDHIIAERKRREKLGQRFIALSAVIPRL-----KKKDKASVLGDAVEYIKEL 220
                        6799************************.....89***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.811171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9174220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16175233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-15175238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-11176225No hitNo description
SMARTSM003532.5E-12177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.665282349IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEDIYTFLAS QGSNEMEISG NRWFSELGVD DSRLIYEGDM SSFNQFAPQV APALAGGFQQ  60
SLSSESYTSH PSFHPVVGAP QKGFIEGPKK MQKINSWSPH NTEKNAAFGL DAPSPDSLSF  120
HNPNSPNKTV SMRAAASQEE MRALVSHGSA QNYETITQQV SKTTKMGPVL SQAQDHIIAE  180
RKRREKLGQR FIALSAVIPR LKKKDKASVL GDAVEYIKEL KERVKTLEDQ NATRTVESMV  240
LVKKSKLSVD DDGSSSNEFS NGCSSEESLP EIEVMLSEKT ALMKIHCENR RGVLGRLLSE  300
IEKVHLTVTN ANIMPFLSSS IFITVAAKVE GEFSITLEDL ARKLNSALS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13175224857Transcription factor MYC2
5gnj_B1e-13175224857Transcription factor MYC2
5gnj_E1e-13175224857Transcription factor MYC2
5gnj_F1e-13175224857Transcription factor MYC2
5gnj_G1e-13175224857Transcription factor MYC2
5gnj_I1e-13175224857Transcription factor MYC2
5gnj_M1e-13175224857Transcription factor MYC2
5gnj_N1e-13175224857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184ERKRRE
2180185RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697825.10.0transcription factor bHLH18-like
RefseqXP_017697826.10.0transcription factor bHLH18-like
TrEMBLA0A2H3ZN280.0A0A2H3ZN28_PHODC; transcription factor bHLH18-like
STRINGXP_008787362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-57bHLH family protein