PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509193g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 460aa    MW: 51676.3 Da    PI: 5.8319
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509193g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind88.96.2e-2811942101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d++++++       +sfvv+++ +f+ ++Lp yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F kg+k
  PDK_30s65509193g001  11 FLLKTYDMVDDSSTDDI-------TSFVVWNPPDFSARLLPAYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIKGQK 84 
                          99*********999884.......79***************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  PDK_30s65509193g001  85 HLLKNIHRRK 94 
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-30793IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-52793IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-28793IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-231193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404367IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEGGGGGPAP FLLKTYDMVD DSSTDDITSF VVWNPPDFSA RLLPAYFKHN NFSSFIRQLN  60
TYGFRKIDPE RWEFANEDFI KGQKHLLKNI HRRKPIHSHS HPPGSLVDSE RAALEEEIER  120
LTRERAALQA DLYRFKQQQT GTKIQLDDLE RRLVEMEQRQ LKMIAFLQRA VQNPRFVENL  180
AKMVTSSSLS VDFKAIHKKR RLPGTGYCQE APENSLYDDH SSTSKPDIGH GFHTDFCHKL  240
KLELCPAISD GNLVTVSSQS SHEDNGSPHM KQPECGLIRT ENLPLSPQPL DLSDTGASLC  300
PAKNLWFPGA VDEGDGHFPC HLNLTLASSS MQLDSNQYSS RNSNSADHRV HNACELREAE  360
MSRDDSLGQA AGNIQSTSAD AKAASLQEVT PCSNQEPKAP QGRTNDAFWE KFLTERPGPS  420
DTEEASSSFR ENPGDAEQEG RKPDNENIWR NRKDMEQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-1649319129Heat shock factor protein 1
5d5v_B4e-1649319129Heat shock factor protein 1
5d5v_D4e-1649319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085473e-41KF208547.1 Triticum aestivum heat shock factor A4e (HsfA4e) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813276.10.0heat stress transcription factor A-5-like
SwissprotQ6K6S51e-169HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A2H3ZGR30.0A0A2H3ZGR3_PHODC; heat stress transcription factor A-5-like
STRINGXP_008813276.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-114HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]