PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s65509113g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 27560.6 Da PI: 10.16 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.6 | 1.6e-10 | 213 | 234 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK vk++++pr PDK_30s65509113g003 213 LDDGYKWRKYGQKIVKNTQHPR 234 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-12 | 198 | 234 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-9 | 206 | 234 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.737 | 208 | 234 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.8E-4 | 213 | 246 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-7 | 214 | 234 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MSLFELVEDS VVIELNIISI KLKVFAFILK DLHHIPYRRK TGRGRKKDRE MFPPKVSAVL 60 NQGFVEDRMS FCTQISPPPH LSFPPHGIQQ TLGGLNMGGG VASYLKEGLP SIPSQYGVAS 120 SDGGGLGQFG ASSGQRSSNS LWSYDEEEGD LGNKISSAGE DDHKYLKNNS CSSNKNNINN 180 LSVGAIRMKK LKARKKVREP RFCFKTLSEV DVLDDGYKWR KYGQKIVKNT QHPRIEQVLV 240 KLRGLIH |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008794985.2 | 1e-135 | probable WRKY transcription factor 13 | ||||
TrEMBL | A0A2H3Y8D2 | 1e-133 | A0A2H3Y8D2_PHODC; probable WRKY transcription factor 13 | ||||
STRING | XP_008794985.1 | 1e-173 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39410.1 | 1e-27 | WRKY DNA-binding protein 13 |