PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1164261g008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YA | ||||||||
Protein Properties | Length: 259aa MW: 28600.8 Da PI: 7.0987 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 53.7 | 6.7e-17 | 100 | 134 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrk PDK_30s1164261g008 100 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRK 134 69****************************.99988 PP | |||||||
2 | CBFB_NFYA | 41.6 | 4.1e-13 | 180 | 205 | 33 | 58 |
CBFB_NFYA 33 ksrkpylheSRhkhAlrRpRgsgGrF 58 ++ +pylheSRh hAl+R+Rg+gGrF PDK_30s1164261g008 180 ENSQPYLHESRHLHALKRARGCGGRF 205 5689*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.2E-22 | 98 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 29.396 | 99 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.7E-26 | 101 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 104 | 124 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAFDQMTDNS GPYEQQKPAQ PEIQHEAPST GNFQPGMATP VGYMMPPGHL ETGHAVAQIA 60 YPYVDPYYGG GFAAFGQTVF HPQMMGMQHP GVPLPTEAVE EPVYVNAKQY HGILRRRQSR 120 AKAESENKLI KSRKVSSCCA GTNYHIICQY GTIPSQQLTC TSTGTRILNH SLRSLVPFYE 180 NSQPYLHESR HLHALKRARG CGGRFLNSKS EGNQQNSNSK FEDNQENGQI AAVSDDKEKP 240 ISLLNSDKSS LDNEPEATS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008778422.1 | 1e-142 | nuclear transcription factor Y subunit A-7-like isoform X3 | ||||
TrEMBL | A0A2H3X503 | 1e-140 | A0A2H3X503_PHODC; nuclear transcription factor Y subunit A-7-like isoform X3 | ||||
STRING | XP_008778418.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6555 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 3e-45 | nuclear factor Y, subunit A7 |