PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1082161g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 26976.2 Da PI: 7.253 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.3 | 3.6e-05 | 137 | 174 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+e+Ik L PDK_30s1082161g001 137 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEHIKFL 174 67788899********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.185 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.27E-5 | 135 | 178 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 135 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-11 | 135 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MLQEDPRSRA YFREEPSVES NQVHAVTGDS TTNLFKDMNQ SFLSEQQHLS AGNESRDAGV 60 SSYPLVPASY GCSSVMLQGL LEPDAKPQQS VYDNRLLNSE GVRDSCSSPS KKSGSSEPTS 120 KKPRIESPLP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIEH IKFLHDQVGV 180 LSTPYLKNGH PMQHQQGSDK SKNGDGPKQD LRSRGLCLVP ISITYPMASE TTADFWHPTF 240 GGTFR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008777138.1 | 8e-94 | transcription factor bHLH123-like | ||||
Swissprot | Q8GXT3 | 1e-52 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A2H3X230 | 2e-92 | A0A2H3X230_PHODC; transcription factor bHLH123-like | ||||
STRING | XP_008777138.1 | 3e-93 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61660.3 | 5e-50 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|