PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1034221g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family BBR-BPC
Protein Properties Length: 354aa    MW: 39898 Da    PI: 9.9296
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1034221g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind365.11.3e-11113541301
           GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnk 80 
                         md++g+re  r+k+ +y+        p+ +lken++++ m++++erd++i+e+n+al+ekkaa+aerd+a lqrd+a+aern+a++erdn+
  PDK_30s1034221g002   1 MDNSGQREngRHKTdQYKqvhtqwmmPQYQLKENQTIKFMAIMSERDNAIQEHNIALAEKKAALAERDVAILQRDTAIAERNNAIMERDNA 91 
                         9999999999**99999999999998889************************************************************** PP

           GAGA_bind  81 llalllvensla.....salpvgvqvlsgtksidslqqlse.......pqledsave....lreeeklealpieeaaeeakekkkkkkrqr 155
                         ++al++++++ +     +a+p+g+ + +g+k+i+++qq++        pql+d +++    +re++++ea+pi++a e+a + +++k+ ++
  PDK_30s1034221g002  92 IAALQYARENGMntngaTACPPGCAAPRGSKHIHHHQQQHLqhihpspPQLSDAPYNhynhAREMHITEAFPISTASESAAKGRMVKRPRK 182
                         *****98776655889899****************9995545699**99999988754335789**************9999999997777 PP

           GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGa 218
                         ++k +++  kk  k+++ks+k   ++ +  r                            +++e+k +dl+ln+v+++e+t+P+PvCsCtG+
  PDK_30s1034221g002 183 ETKVQNSPYKKSSKTPRKSRKGGGEDLN--RqvtiakpasdwrgevgggddlnervsltKHQEWKGQDLGLNQVTFEEATMPTPVCSCTGK 271
                         7766666666666655555444444333..246899999*******************9999***************************** PP

           GAGA_bind 219 lrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          +qCYkW nGGWqSaCCttt+S+yPLPv++++r++R++grKmS+gaf+klL++LaaeG+dls+ vDLkdhWAkHGtn+++ti+
  PDK_30s1034221g002 272 YQQCYKWENGGWQSACCTTTLSMYPLPVMPNKRHTRMGGRKMSGGAFRKLLSRLAAEGHDLSQSVDLKDHWAKHGTNRYITIK 354
                         **********************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1431354IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-921354IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDNSGQRENG RHKTDQYKQV HTQWMMPQYQ LKENQTIKFM AIMSERDNAI QEHNIALAEK  60
KAALAERDVA ILQRDTAIAE RNNAIMERDN AIAALQYARE NGMNTNGATA CPPGCAAPRG  120
SKHIHHHQQQ HLQHIHPSPP QLSDAPYNHY NHAREMHITE AFPISTASES AAKGRMVKRP  180
RKETKVQNSP YKKSSKTPRK SRKGGGEDLN RQVTIAKPAS DWRGEVGGGD DLNERVSLTK  240
HQEWKGQDLG LNQVTFEEAT MPTPVCSCTG KYQQCYKWEN GGWQSACCTT TLSMYPLPVM  300
PNKRHTRMGG RKMSGGAFRK LLSRLAAEGH DLSQSVDLKD HWAKHGTNRY ITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803316.10.0barley B recombinant-like protein D isoform X2
SwissprotQ5VSA81e-143BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A2H3YTL80.0A0A2H3YTL8_PHODC; barley B recombinant-like protein D isoform X2
STRINGXP_008803315.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.17e-97basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]