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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PDK_30s1034221g002 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family |
BBR-BPC |
Protein Properties |
Length: 354aa MW: 39898 Da PI: 9.9296 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PDK_30s1034221g002 | genome | PDK | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 365.1 | 1.3e-111 | 1 | 354 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnk 80
md++g+re r+k+ +y+ p+ +lken++++ m++++erd++i+e+n+al+ekkaa+aerd+a lqrd+a+aern+a++erdn+
PDK_30s1034221g002 1 MDNSGQREngRHKTdQYKqvhtqwmmPQYQLKENQTIKFMAIMSERDNAIQEHNIALAEKKAALAERDVAILQRDTAIAERNNAIMERDNA 91
9999999999**99999999999998889************************************************************** PP
GAGA_bind 81 llalllvensla.....salpvgvqvlsgtksidslqqlse.......pqledsave....lreeeklealpieeaaeeakekkkkkkrqr 155
++al++++++ + +a+p+g+ + +g+k+i+++qq++ pql+d +++ +re++++ea+pi++a e+a + +++k+ ++
PDK_30s1034221g002 92 IAALQYARENGMntngaTACPPGCAAPRGSKHIHHHQQQHLqhihpspPQLSDAPYNhynhAREMHITEAFPISTASESAAKGRMVKRPRK 182
*****98776655889899****************9995545699**99999988754335789**************9999999997777 PP
GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGa 218
++k +++ kk k+++ks+k ++ + r +++e+k +dl+ln+v+++e+t+P+PvCsCtG+
PDK_30s1034221g002 183 ETKVQNSPYKKSSKTPRKSRKGGGEDLN--RqvtiakpasdwrgevgggddlnervsltKHQEWKGQDLGLNQVTFEEATMPTPVCSCTGK 271
7766666666666655555444444333..246899999*******************9999***************************** PP
GAGA_bind 219 lrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+qCYkW nGGWqSaCCttt+S+yPLPv++++r++R++grKmS+gaf+klL++LaaeG+dls+ vDLkdhWAkHGtn+++ti+
PDK_30s1034221g002 272 YQQCYKWENGGWQSACCTTTLSMYPLPVMPNKRHTRMGGRKMSGGAFRKLLSRLAAEGHDLSQSVDLKDHWAKHGTNRYITIK 354
**********************************************************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MDNSGQRENG RHKTDQYKQV HTQWMMPQYQ LKENQTIKFM AIMSERDNAI QEHNIALAEK 60 KAALAERDVA ILQRDTAIAE RNNAIMERDN AIAALQYARE NGMNTNGATA CPPGCAAPRG 120 SKHIHHHQQQ HLQHIHPSPP QLSDAPYNHY NHAREMHITE AFPISTASES AAKGRMVKRP 180 RKETKVQNSP YKKSSKTPRK SRKGGGEDLN RQVTIAKPAS DWRGEVGGGD DLNERVSLTK 240 HQEWKGQDLG LNQVTFEEAT MPTPVCSCTG KYQQCYKWEN GGWQSACCTT TLSMYPLPVM 300 PNKRHTRMGG RKMSGGAFRK LLSRLAAEGH DLSQSVDLKD HWAKHGTNRY ITIK
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |