PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1033231g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Dof
Protein Properties Length: 303aa    MW: 31509.1 Da    PI: 8.7799
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1033231g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof106.81.1e-3372125255
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55 
                         +e alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvP   ++
  PDK_30s1033231g002  72 PEPALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPRTKSS 125
                         67899********************************************65544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3156120IPR003851Zinc finger, Dof-type
PfamPF027013.6E-2975125IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.21776130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVFSSVPVYL DLPNWNQQQA HQPPSASGGS GGEAHQLPPG LAAPRPEAGM AAGSARPVSM  60
TDRARLAKIP QPEPALKCPR CDSTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRNVP  120
RTKSSGSSSK SSTTADRQAA NASSSSSSTA TSAGCAILPS IAPPTQLPFM ASLHPLADYG  180
GSSNLGLSFT GIHPIEQLDY QAPPPPPAQP VPGLYPLDEE SGGEGFAGQF LPKLSGSGLI  240
SQLASVKMED NSQRLNLPRQ YLAVPGNNQY WGGGAGAGTA SGGSAGWTGD LSGFNSSTSG  300
NIL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839425e-51AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBankAC1044335e-51AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAC1376985e-51AC137698.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence.
GenBankAC2104765e-51AC210476.2 Oryza glaberrima clone OG_BBa0060N11, complete sequence.
GenBankAP0149595e-51AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126115e-51CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802760.11e-169dof zinc finger protein DOF5.1-like isoform X1
TrEMBLA0A2H3YRJ61e-167A0A2H3YRJ6_PHODC; dof zinc finger protein DOF5.1-like isoform X1
STRINGXP_008802760.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-42OBF-binding protein 3