PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1025861g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 711aa    MW: 77450.7 Da    PI: 5.4867
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1025861g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27206259155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ +LH +Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  PDK_30s1025861g001 206 KPRVVWSVDLHGKFVAAVNQL-GIDKAVPKKILDLMNVENLTRENVASHLQKYRL 259
                         79*******************.********************************8 PP
2Response_reg75.42.2e-25251331109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl vdD+p+ ++ll+++l + +y +v+++++++ alell+e++  +Dl + D+ mp+mdG++ll+     e++lp+i+++a+g+ + + + 
  PDK_30s1025861g001  25 VLAVDDDPTCLKLLENLLLRCQY-NVTTTTKATVALELLRENKdkFDLAISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKAVMKG 113
                         799********************.***************888889*******************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+  ee+ +
  PDK_30s1025861g001 114 ITHGACDYLLKPIRLEEVKN 133
                         **************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.8E-4022146No hitNo description
SuperFamilySSF521726.69E-3422144IPR011006CheY-like superfamily
SMARTSM004482.5E-3023135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.57424139IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.8E-2325133IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.60E-1859138No hitNo description
Gene3DG3DSA:3.40.50.23001.8E-40187191No hitNo description
PROSITE profilePS5129410.916203262IPR017930Myb domain
SuperFamilySSF466895.02E-19203263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-29204264IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-24206259IPR006447Myb domain, plants
PfamPF002491.5E-5208258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MTEEEGRRSM EEGEPTDEFP AGMRVLAVDD DPTCLKLLEN LLLRCQYNVT TTTKATVALE  60
LLRENKDKFD LAISDVHMPD MDGFKLLELV GLEMDLPVIM LSANGDTKAV MKGITHGACD  120
YLLKPIRLEE VKNIWQHVVR RRKFDARHNN NGDNGPRAQL PNSESVQGLG DSSDKPNRKR  180
KDQNEEDDEA SEENIQENED SSTQKKPRVV WSVDLHGKFV AAVNQLGIDK AVPKKILDLM  240
NVENLTRENV ASHLQKYRLY LKRLSTVANQ QTNMASVLGG RNSSYTNTSS LDGFRNFLAF  300
GGSRQLPALT SFQPNVLLGR MNSSTAFGMH RLVPSQTVQL GCTHNNTSNV INDLWKLQGT  360
SLPGNHQGNS LQGIPTSMGP DQLRRLDVVQ EANNILPSSF SGSGLTNGLC SNSFTNMANK  420
PFSLQANKEQ THAGELDKYY SVKMSSSSSD PFESCLVDSS QFPDLVRCNT WQDALPLTDY  480
RATTLPMGAP FGNNCSPPSN VGGSVPSTVS NMDSDICGQS SIHAAVAPMH GLLIGNDVSD  540
ICGQSSIHAA VAPMHGLLIG NDVHSRVGSL GGSMMPVPMG GYEDPKFPDL SSLDKSKQKW  600
EEQKQNHSFN PNALFSSSLN SSLPNLHGND PIANQILSSA IGNKKMDTDE IGQAALNARD  660
LAQQGSFDKS TANGQMAYGD EYALETTKSH CNFSSADCSY SELVSAMIKA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-25202265164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796839.10.0two-component response regulator ORR24
SwissprotQ6H8051e-164ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A2H3YDB30.0A0A2H3YDB3_PHODC; Two-component response regulator
STRINGXP_008796839.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-117response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]