PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1008821g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | WRKY | ||||||||
Protein Properties | Length: 174aa MW: 19329.8 Da PI: 7.803 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.9 | 1.2e-29 | 101 | 158 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+ d ++v++tYeg H h PDK_30s1008821g006 101 LDDGFKWRKYGKKSVKNSPNPRNYYRCSSQGCSVKKRVERDPGDSNYVITTYEGVHSH 158 59*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.5E-31 | 91 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-27 | 95 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.274 | 96 | 161 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-34 | 101 | 160 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 102 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MLHSSLLLSN DSTGYDCWDF ISANSTNQSV LEYSDRMAFV DEGLFEELQL PTVIAPVEVT 60 GESSGDSTKH RAMLCGGEMK RMKLDAGCRI GFRMKSAVEI LDDGFKWRKY GKKSVKNSPN 120 PRNYYRCSSQ GCSVKKRVER DPGDSNYVIT TYEGVHSHIS PGAASYSRCI SLSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-24 | 89 | 161 | 2 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008812299.1 | 1e-129 | probable WRKY transcription factor 51 | ||||
Swissprot | Q93WU9 | 2e-39 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2H3ZDW6 | 1e-128 | A0A2H3ZDW6_PHODC; probable WRKY transcription factor 51 | ||||
STRING | XP_008812299.1 | 1e-128 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 7e-42 | WRKY DNA-binding protein 51 |
Publications ? help Back to Top | |||
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