PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote236566410001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 358aa    MW: 39423.5 Da    PI: 6.3071
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote236566410001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07276296526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C++f++ G C++Gd C +aHg
  Ote236566410001|236566410001 276 PCPDFRK-GACRRGDMCEYAHG 296
                                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002043.08E-143129No hitNo description
Gene3DG3DSA:1.25.40.203.7E-173129IPR020683Ankyrin repeat-containing domain
SMARTSM002484100433IPR002110Ankyrin repeat
SuperFamilySSF484031.87E-168129IPR020683Ankyrin repeat-containing domain
PfamPF127963.9E-1112120IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.08851127IPR020683Ankyrin repeat-containing domain
SMARTSM002480.315181IPR002110Ankyrin repeat
PRINTSPR014152.4E-65267IPR002110Ankyrin repeat
PROSITE profilePS5008812.04886121IPR002110Ankyrin repeat
SMARTSM002480.00186118IPR002110Ankyrin repeat
PRINTSPR014152.4E-6105119IPR002110Ankyrin repeat
SMARTSM003564.0E-6271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5274298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582276298IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5304334IPR000571Zinc finger, CCCH-type
SMARTSM0035664306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
ETDDSFSSLL EFAANNDIES FKRLIEVDLS LVDEAGPWYV RKKGSKQISQ EERTPLMVAA  60
TYGSVDVLKL IVALPEVDLN RSCGVDKWTS LHCAAFGGSI NAFDVVKLLL SAGADPNVED  120
ARGLRPVDVI IVPPKLPGAK AALEDLLMNN ISDGSVGECN LRVTISNSNA SSPVLSSSPE  180
SRSTCSLSDS VSSPTAPKFV DHAMNSLSEK KQYPVDPSLP DIRNSIYSTD EFRMFSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTSCAR QVCFFAHTQE ELRPLYVSTG SGVPSPRSAA SAASFMDM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087691.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937551e-166C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A4D9C0460.0A0A4D9C046_SALSN; Uncharacterized protein
STRINGMigut.B01294.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]