PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100277980041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 184aa MW: 20787.1 Da PI: 8.4741

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100277980041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.6e-30	83	141	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prs Y+Ct +gC+v k++er+a+d k+v++t+eg+Hnh+ Ote100277980041\|100277980041 83 LDDGYRWRKYGQKVVKGNPHPRSCYKCTNQGCNVLKHIERAATDVKAVITTNEGKHNHD 141 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.8E-33	68	143	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-26	75	143	IPR003657	WRKY domain
PROSITE profile	PS50811	34.693	78	143	IPR003657	WRKY domain
SMART	SM00774	3.6E-32	83	142	IPR003657	WRKY domain
Pfam	PF03106	2.7E-22	84	141	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MKYQSCKIGK LRHLYLTIPP NEQGNKDSCT RDSGIYPTPE SSDSEDEEDP ESKKRRSEQE 60 ALSQRTVTEP RIIVQTTSEV DLLDDGYRWR KYGQKVVKGN PHPRSCYKCT NQGCNVLKHI 120 ERAATDVKAV ITTNEGKHNH DVPAAKTSSH ATANAARSMA VDRVENGSNE QRRVGLNFKE 180 ERIM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-39	74	144	8	78	Probable WRKY transcription factor 4
2lex_A	1e-39	74	144	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070970.1	1e-60	probable WRKY transcription factor 3 isoform X2
Swissprot	Q9ZQ70	3e-50	WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBL	A0A061EB13	2e-56	A0A061EB13_THECC; WRKY DNA-binding protein 4, putative isoform 2
STRING	EOY01812	1e-56	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4107	24	45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Aamir M, et al. Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach. Front Plant Sci, 2017. 8: p. 819 [PMID:28611792]