PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100273530051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YA

Protein Properties

Length: 231aa MW: 25701 Da PI: 9.7109

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100273530051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.1	5.1e-32	143	199	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl +k rkpylheSRh hAlrR+Rg gGrF Ote100273530051\|100273530051 143 EEPVFVNAKQYHGILRRRQSRAKAESENKL-SKPRKPYLHESRHLHALRRARGIGGRF 199 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.9E-35	141	202	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.485	142	202	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.6E-27	144	199	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-23	145	167	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	147	167	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.9E-23	176	199	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MLLASFLRIN FRLRRSIVID SIPVSALQVC AHHSSIMTSS VHSLSDNSEA DEQQKHAEAY 60 VQPSSPVKGM CHTGIASPAM HYAAPAQVGA GNAQTAYPYP DPYYRSIFAP YETQPYPAQP 120 YPAQPMLMGI QQAGVPLPSE AVEEPVFVNA KQYHGILRRR QSRAKAESEN KLSKPRKPYL 180 HESRHLHALR RARGIGGRFQ KKNDKEVESS GKSQDNINLN SEKDVPRKDA D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-20	142	199	1	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096682.1	1e-108	nuclear transcription factor Y subunit A-7-like isoform X6
Swissprot	Q84JP1	5e-57	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A4D9A4N0	1e-112	A0A4D9A4N0_SALSN; Uncharacterized protein
STRING	Migut.M01893.1.p	1e-102	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]